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The map label for this gene is ydeM [C]

Identifier: 78222460

GI number: 78222460

Start: 1405886

End: 1407184

Strand: Direct

Name: ydeM [C]

Synonym: Gmet_1246

Alternate gene names: 78222460

Gene position: 1405886-1407184 (Clockwise)

Preceding gene: 78222459

Following gene: 78222464

Centisome position: 35.17

GC content: 57.27

Gene sequence:

>1299_bases
ATGCACCTTTCCCGCTATCTGAAACGGTACTCCTGCCATGAGCGGCCGGGGCACCTGCTTCTCTTTTCCACCAGAACCGC
TGCCATCGCCATCGTTCCCGAGAAGGTCATTGCCAATATCGAACAGGGAGCCATCAGTCCGGCGACCGCTGAAACCCTCT
CGCGTCTCGGGTTTCTTGTCCCCGATACCGAGGTCGAGGCGGAACAGGTACGTCAGTTGTTCACGACGATCAATGGGGAG
CGCACCGTTGCCACCATCATCGCCGTTCTGAACATGGACTGCAACCTGGCCTGCACTTACTGCTTCGAGGGTGGGCTGAA
GGGGAAGCGGTACATGGATCACGCAACGGCAGAACGACTGGTATCTTTTCTGGACCGCCATTACCTCGCCGAAGGCATTG
CCCCCAATCTGGATTTTTACGGTGGTGAGCCCCTCTTGAGTCTGGATCTGATCCGTTCCATCACCACGAGGCTGAAAGAA
CGTGCTGCCGGACGTGGGCTTTCCTGTTCCTTCGGCATGGTCAGCAACGGTACGCTTTTGACCGGAGATGTGGCCTGCGA
GTTGGCCTCGCTGGGCGTTACCGGGGTCCAGGTTACCCTTGACGGCACTCGCGAGAACCATGATCGATACAGACCCTTTG
TCTCCGGAAAGGGAAGCTTTGATGTGATAGTGCGGAATCTGCTGGAAGCATGCGATCTGCTCGATATCAGCATCGTCTGC
AACTACACCCAGGAGAATTACTGGGGATTCCCCTCCCTGCTCGATTATCTCCTTGAAGTAGGCCTGAAGCCCGAACGGAT
TGCTGCTGTCAATTTCGCCCCCATCTCCCGAATCGGCACAGGGGAGCTTCCCCCCGAGTTCAACGATAGCTGTGCCTCCC
ACAATATGCCGTGGGTTTACGAATCGCAGCTCTTTTTGCGTCAGGAGGCTCTGAAGCGGGGCTACTCAGTGGCGAAGCTC
CGTCCGCCGCTCTGCATGGTGGAATTGGCCCGTGATCTCGTGGTTACCCACGAAGGGGAATTGTACAAGTGCCCGGCTTT
CATGGGGCGGAAGGGGCTTGCGGTTGGTACGCTGGAAGCGGGCGTCACGGAGTACCGGGAATCTCACAATCTCGATCTCT
GGAATAACGAGGAATGTCTCGACTGTGAGTATCTCCCCTTCTGCTACGGTGGGTGCAGGCTTTCGCGGCTCGCGCAGACG
GGGGAGATTAATGGGGTGGACTGCCGAAGGGACTACTACGAAGCATCCCTTGAGCGGTATGTCCGGCAAGAGATGGCCAA
CACGTCCCGTAAACGATAA

Upstream 100 bases:

>100_bases
CCTGAAGCATGAAGGAAGGGGGAGCTATTCCCCCTTTTTTTTATGTGTCATGGTGATGGATCGCAATGCACTCCTTACTT
TGGCGCCAGGGAGGGCCGCC

Downstream 100 bases:

>100_bases
CTTTGCCGGAGACGAATTTGATTCCGTGAAGCACTGCTCGATTGACGGGGGTTACGGCGCTGTCACCTGCACTACCGAGC
TTGTTTCGCCATTGGGGTTA

Product: radical SAM family protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Fe-S Oxidoreductase; Radical Sam Domain Protein; Heme Biosynthesis Family Protein; Transcriptional Regulator; AstB/ChuR-Related Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; Heme Biosynthesis; Arylsulfatase Regulatory Protein; Regulatory Protein; Radical SAM; Heme Biosynthesis Related Protein; Radical Sam Protein; Radical Sam Family Protein; Radical SAM-Family Protein; Fe-S Oxidoreductases; Arylsulfatase-Activating AtsB; Qinohemoprotein Amine Dehydrogenase; Heme Biosynthesis Protein; Transcriptional Regulatory Protein; Six-Cys-In-45 Radical SAM Protein; Anaerobic Sulfatase-Maturase Family Protein

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MHLSRYLKRYSCHERPGHLLLFSTRTAAIAIVPEKVIANIEQGAISPATAETLSRLGFLVPDTEVEAEQVRQLFTTINGE
RTVATIIAVLNMDCNLACTYCFEGGLKGKRYMDHATAERLVSFLDRHYLAEGIAPNLDFYGGEPLLSLDLIRSITTRLKE
RAAGRGLSCSFGMVSNGTLLTGDVACELASLGVTGVQVTLDGTRENHDRYRPFVSGKGSFDVIVRNLLEACDLLDISIVC
NYTQENYWGFPSLLDYLLEVGLKPERIAAVNFAPISRIGTGELPPEFNDSCASHNMPWVYESQLFLRQEALKRGYSVAKL
RPPLCMVELARDLVVTHEGELYKCPAFMGRKGLAVGTLEAGVTEYRESHNLDLWNNEECLDCEYLPFCYGGCRLSRLAQT
GEINGVDCRRDYYEASLERYVRQEMANTSRKR

Sequences:

>Translated_432_residues
MHLSRYLKRYSCHERPGHLLLFSTRTAAIAIVPEKVIANIEQGAISPATAETLSRLGFLVPDTEVEAEQVRQLFTTINGE
RTVATIIAVLNMDCNLACTYCFEGGLKGKRYMDHATAERLVSFLDRHYLAEGIAPNLDFYGGEPLLSLDLIRSITTRLKE
RAAGRGLSCSFGMVSNGTLLTGDVACELASLGVTGVQVTLDGTRENHDRYRPFVSGKGSFDVIVRNLLEACDLLDISIVC
NYTQENYWGFPSLLDYLLEVGLKPERIAAVNFAPISRIGTGELPPEFNDSCASHNMPWVYESQLFLRQEALKRGYSVAKL
RPPLCMVELARDLVVTHEGELYKCPAFMGRKGLAVGTLEAGVTEYRESHNLDLWNNEECLDCEYLPFCYGGCRLSRLAQT
GEINGVDCRRDYYEASLERYVRQEMANTSRKR
>Mature_432_residues
MHLSRYLKRYSCHERPGHLLLFSTRTAAIAIVPEKVIANIEQGAISPATAETLSRLGFLVPDTEVEAEQVRQLFTTINGE
RTVATIIAVLNMDCNLACTYCFEGGLKGKRYMDHATAERLVSFLDRHYLAEGIAPNLDFYGGEPLLSLDLIRSITTRLKE
RAAGRGLSCSFGMVSNGTLLTGDVACELASLGVTGVQVTLDGTRENHDRYRPFVSGKGSFDVIVRNLLEACDLLDISIVC
NYTQENYWGFPSLLDYLLEVGLKPERIAAVNFAPISRIGTGELPPEFNDSCASHNMPWVYESQLFLRQEALKRGYSVAKL
RPPLCMVELARDLVVTHEGELYKCPAFMGRKGLAVGTLEAGVTEYRESHNLDLWNNEECLDCEYLPFCYGGCRLSRLAQT
GEINGVDCRRDYYEASLERYVRQEMANTSRKR

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48274; Mature: 48274

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSRYLKRYSCHERPGHLLLFSTRTAAIAIVPEKVIANIEQGAISPATAETLSRLGFLV
CCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCC
PDTEVEAEQVRQLFTTINGERTVATIIAVLNMDCNLACTYCFEGGLKGKRYMDHATAERL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
VSFLDRHYLAEGIAPNLDFYGGEPLLSLDLIRSITTRLKERAAGRGLSCSFGMVSNGTLL
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCEEE
TGDVACELASLGVTGVQVTLDGTRENHDRYRPFVSGKGSFDVIVRNLLEACDLLDISIVC
EHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEEE
NYTQENYWGFPSLLDYLLEVGLKPERIAAVNFAPISRIGTGELPPEFNDSCASHNMPWVY
ECCCCCCCCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEE
ESQLFLRQEALKRGYSVAKLRPPLCMVELARDLVVTHEGELYKCPAFMGRKGLAVGTLEA
HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHEECCCCEEECHHHHCCCCCEEEHHHH
GVTEYRESHNLDLWNNEECLDCEYLPFCYGGCRLSRLAQTGEINGVDCRRDYYEASLERY
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VRQEMANTSRKR
HHHHHHHHCCCC
>Mature Secondary Structure
MHLSRYLKRYSCHERPGHLLLFSTRTAAIAIVPEKVIANIEQGAISPATAETLSRLGFLV
CCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCC
PDTEVEAEQVRQLFTTINGERTVATIIAVLNMDCNLACTYCFEGGLKGKRYMDHATAERL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
VSFLDRHYLAEGIAPNLDFYGGEPLLSLDLIRSITTRLKERAAGRGLSCSFGMVSNGTLL
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCEECCCEEE
TGDVACELASLGVTGVQVTLDGTRENHDRYRPFVSGKGSFDVIVRNLLEACDLLDISIVC
EHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEEE
NYTQENYWGFPSLLDYLLEVGLKPERIAAVNFAPISRIGTGELPPEFNDSCASHNMPWVY
ECCCCCCCCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEE
ESQLFLRQEALKRGYSVAKLRPPLCMVELARDLVVTHEGELYKCPAFMGRKGLAVGTLEA
HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHEECCCCEEECHHHHCCCCCEEEHHHH
GVTEYRESHNLDLWNNEECLDCEYLPFCYGGCRLSRLAQTGEINGVDCRRDYYEASLERY
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VRQEMANTSRKR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA