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The map label for this gene is bphB [H]

Identifier: 78222434

GI number: 78222434

Start: 1375112

End: 1376302

Strand: Direct

Name: bphB [H]

Synonym: Gmet_1219

Alternate gene names: 78222434

Gene position: 1375112-1376302 (Clockwise)

Preceding gene: 78222433

Following gene: 78222436

Centisome position: 34.4

GC content: 54.49

Gene sequence:

>1191_bases
ATGGAATTCCAGCAATACCCGGATGTTCGTCTGTCACTTCTTTACGTGGAGGATGAACCCGAGATCAGGGAGCTTCTCAG
GAGTGTGTTGGTAAGGAAATTCCCCAATGTGGATATCCAGACTGCAGAAAATGGCATGGCCGGATTGGAGCTGTTCAGGG
AACAACGGCCGGATATCATTCTGACCGATATCCGCATGCCGGTCATGGATGGTATCCAGATGACCCGCAGGATACTGGAA
GAGGACCCGGCAGTAAGTGTCATCATCATTTCTGCCTGCAGTGAAACGGACTACCTGCTGGAGGCCATCAAGATGGGGAT
CAACAGGTATGTGCTGAAACCCATTAACCACAAGCTGCTCTTTGAGGCTATCGACGACTGCGCCGCCCGAATCATTCACG
GACGTCAGGTCAAGGCGCAGAACGAGTTGATTCGCCGACTGAATGAAGAACTGGAGCAGCGCGTTGCGGATCGCACCGCC
GAGCTTGAGGCCTCAAACCGCGAACTCCAGGCTTTCTGCTACTCGGTCGCCCACGACCTGAGCACTCCCCTGCGAGGAAT
AAACGGCTACAGTAACATCCTCCTTGAAGAGTATTCCGACAAGCTCGATGATGAGGGCAAGAGCTATCTCGAACGGATGG
GGGCGGCGGCCGAGAGGATGGGGCAGTTGATCAACGACCTTCTCGAGCTTTCCCGGGTTACGCGCAGAGAATTGCATCGG
GAGAAGATTGACCTCAGTCATCTTGCTCACCGTATCGTTATGGATCTGCAACAGCATGATCCAGACCGCCAGGCTGAAGT
CATCATTGCCGAAAACATTATGGACGAAGGCGACCCGATTCTCATCCGGCTGGCACTGGAAAATCTCCTTGGCAATGCAT
GGAAATACACCACCAGGGTTTCCAGTCCCAGAATCGAATTTGGGACATGTATCACCAATGGCGAAACGGTCTATTTTGTC
AGCGACAATGGTATCGGTTTCGATATGGCCTACGTCCATAAGCTTTTCATCCCGTTTCAGAGGCTGCATGGTATGGGCGA
GTACGGAGGGACCGGCGTCGGCCTGGCTGCGGTGCAACGGATCATCTCACGGCACGGCGGTAGGATTTGGGCCGAGGGCG
AACCGGGAAAGGGCGCGACGTTCTATTTCAGCCTCAGACGTCCAGCAGCCGGGGCCCTCGTGGAAAGTTAG

Upstream 100 bases:

>100_bases
GGGCTCTTCATCGCGAAGACCATTATCGAAAAGAACATGGGTGGTACGCTCACCGTGCGCAATAGCGGCGAAGGAGCGGA
ATTCAGGATAGAGGTCTGAA

Downstream 100 bases:

>100_bases
CTTGATGCAGCATTTGTGTAAGGAGGGGGAGGGTGATAATCGAGGCAGGAGAACGGACAGAGGTGGGCATTTAGATATAT
TAAGGCAATGAAAAAAGGGG

Product: response regulator receiver sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MEFQQYPDVRLSLLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDIILTDIRMPVMDGIQMTRRILE
EDPAVSVIIISACSETDYLLEAIKMGINRYVLKPINHKLLFEAIDDCAARIIHGRQVKAQNELIRRLNEELEQRVADRTA
ELEASNRELQAFCYSVAHDLSTPLRGINGYSNILLEEYSDKLDDEGKSYLERMGAAAERMGQLINDLLELSRVTRRELHR
EKIDLSHLAHRIVMDLQQHDPDRQAEVIIAENIMDEGDPILIRLALENLLGNAWKYTTRVSSPRIEFGTCITNGETVYFV
SDNGIGFDMAYVHKLFIPFQRLHGMGEYGGTGVGLAAVQRIISRHGGRIWAEGEPGKGATFYFSLRRPAAGALVES

Sequences:

>Translated_396_residues
MEFQQYPDVRLSLLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDIILTDIRMPVMDGIQMTRRILE
EDPAVSVIIISACSETDYLLEAIKMGINRYVLKPINHKLLFEAIDDCAARIIHGRQVKAQNELIRRLNEELEQRVADRTA
ELEASNRELQAFCYSVAHDLSTPLRGINGYSNILLEEYSDKLDDEGKSYLERMGAAAERMGQLINDLLELSRVTRRELHR
EKIDLSHLAHRIVMDLQQHDPDRQAEVIIAENIMDEGDPILIRLALENLLGNAWKYTTRVSSPRIEFGTCITNGETVYFV
SDNGIGFDMAYVHKLFIPFQRLHGMGEYGGTGVGLAAVQRIISRHGGRIWAEGEPGKGATFYFSLRRPAAGALVES
>Mature_396_residues
MEFQQYPDVRLSLLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDIILTDIRMPVMDGIQMTRRILE
EDPAVSVIIISACSETDYLLEAIKMGINRYVLKPINHKLLFEAIDDCAARIIHGRQVKAQNELIRRLNEELEQRVADRTA
ELEASNRELQAFCYSVAHDLSTPLRGINGYSNILLEEYSDKLDDEGKSYLERMGAAAERMGQLINDLLELSRVTRRELHR
EKIDLSHLAHRIVMDLQQHDPDRQAEVIIAENIMDEGDPILIRLALENLLGNAWKYTTRVSSPRIEFGTCITNGETVYFV
SDNGIGFDMAYVHKLFIPFQRLHGMGEYGGTGVGLAAVQRIISRHGGRIWAEGEPGKGATFYFSLRRPAAGALVES

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=247, Percent_Identity=28.7449392712551, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788549, Length=243, Percent_Identity=30.8641975308642, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789149, Length=303, Percent_Identity=25.0825082508251, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693157, Length=264, Percent_Identity=26.1363636363636, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788550, Length=139, Percent_Identity=29.4964028776978, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790346, Length=216, Percent_Identity=28.7037037037037, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786600, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790299, Length=101, Percent_Identity=35.6435643564356, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786783, Length=224, Percent_Identity=26.7857142857143, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788905, Length=115, Percent_Identity=32.1739130434783, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790436, Length=218, Percent_Identity=27.0642201834862, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790437, Length=106, Percent_Identity=33.0188679245283, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 44982; Mature: 44982

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFQQYPDVRLSLLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDII
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCEE
LTDIRMPVMDGIQMTRRILEEDPAVSVIIISACSETDYLLEAIKMGINRYVLKPINHKLL
EECCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
FEAIDDCAARIIHGRQVKAQNELIRRLNEELEQRVADRTAELEASNRELQAFCYSVAHDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
STPLRGINGYSNILLEEYSDKLDDEGKSYLERMGAAAERMGQLINDLLELSRVTRRELHR
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKIDLSHLAHRIVMDLQQHDPDRQAEVIIAENIMDEGDPILIRLALENLLGNAWKYTTRV
HHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHCCCCCCEEHHHHHHHHHCCCCEEHEEC
SSPRIEFGTCITNGETVYFVSDNGIGFDMAYVHKLFIPFQRLHGMGEYGGTGVGLAAVQR
CCCCEEECEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
IISRHGGRIWAEGEPGKGATFYFSLRRPAAGALVES
HHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MEFQQYPDVRLSLLYVEDEPEIRELLRSVLVRKFPNVDIQTAENGMAGLELFREQRPDII
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCEE
LTDIRMPVMDGIQMTRRILEEDPAVSVIIISACSETDYLLEAIKMGINRYVLKPINHKLL
EECCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
FEAIDDCAARIIHGRQVKAQNELIRRLNEELEQRVADRTAELEASNRELQAFCYSVAHDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
STPLRGINGYSNILLEEYSDKLDDEGKSYLERMGAAAERMGQLINDLLELSRVTRRELHR
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKIDLSHLAHRIVMDLQQHDPDRQAEVIIAENIMDEGDPILIRLALENLLGNAWKYTTRV
HHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHCCCCCCEEHHHHHHHHHCCCCEEHEEC
SSPRIEFGTCITNGETVYFVSDNGIGFDMAYVHKLFIPFQRLHGMGEYGGTGVGLAAVQR
CCCCEEECEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
IISRHGGRIWAEGEPGKGATFYFSLRRPAAGALVES
HHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]