Click here to switch to the map view.

The map label for this gene is 78222367

Identifier: 78222367

GI number: 78222367

Start: 1277585

End: 1278307

Strand: Direct

Name: 78222367

Synonym: Gmet_1151

Alternate gene names: NA

Gene position: 1277585-1278307 (Clockwise)

Preceding gene: 78222366

Following gene: 78222369

Centisome position: 31.96

GC content: 57.95

Gene sequence:

>723_bases
GTGATCCCGATAAAGGACTATAATCCGACGCGACGCTTTCCCTTGGTGAGCGTCGCTTTTATCGTTCTGAATGTCATCGT
TTTCATCCTTGACCGCATTTCCGGTCATTACGAGCCTCTGATCATTGAAACCTCACGGGGGCTGATCAGGACGAGGCAGT
TTGTCGGCGGGCTCTCCGCCGACTTTGCCCTCGTTCCGGCGGCCCTCACCTCCCACCCCCTCCTTGCCTGGCCCACCGTG
TTCAGCTCCATGTTCCTCCACGGCAACTGGCTTCACATCGGCTCAAATATGCTTTACCTCTGGATCTTCGGCAACAATGT
TGAAGACGTTCTGGGACGTGGACGGTTTATCCTCTTTTATTTCACCTGCGGAGCGGTAGCTGCCCTGGCACAGGTCATGA
GCGCGCCTGGCTCGGATATTCCGATGGTGGGGGCGAGCGGCGCCGTGGCAGGGGTCATGGGGGCCTATCTTCTCCTCTTT
CCCAAGGCGCGGATTCTGACCCTGGTGCCGATCCTGTTCTTTTTTACGTTCCTGGAAGTGCCGGCGTTCATCATTATCGG
TTACTGGGTGCTTATCCAGTTTCTGAATGCCACCTGGCTGGGGGGAGGGGAGTTGCTGCGGGGAGGGGTCGCCTATTTTG
CCCACATCGGCGGGTTCGTGGCCGGCGTGACCTTTGTCTTGCTTGCGAGGATGGGAAGGCGCGGTGGCTATGGCCGTCTT
TAG

Upstream 100 bases:

>100_bases
ATCATCGGCAAGTGCAACCTCCGGCAAGGAACTGCTCCAGGTGAGCCGAAGGTGTGCGATGATGAGCAGGGGAAGTGACC
GGGGAGCAGGTTAACCATCA

Downstream 100 bases:

>100_bases
GGCGATTACGGTGTCGCCTCGAAACTGTTGAAACGAAGAGAGCCAGCCATCCCCTCCTCGGCGAGGCGGTAGCGGTAGGT
GAACCTGATCCTTTTCGGAA

Product: rhomboid-like protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIPIKDYNPTRRFPLVSVAFIVLNVIVFILDRISGHYEPLIIETSRGLIRTRQFVGGLSADFALVPAALTSHPLLAWPTV
FSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFYFTCGAVAALAQVMSAPGSDIPMVGASGAVAGVMGAYLLLF
PKARILTLVPILFFFTFLEVPAFIIIGYWVLIQFLNATWLGGGELLRGGVAYFAHIGGFVAGVTFVLLARMGRRGGYGRL

Sequences:

>Translated_240_residues
MIPIKDYNPTRRFPLVSVAFIVLNVIVFILDRISGHYEPLIIETSRGLIRTRQFVGGLSADFALVPAALTSHPLLAWPTV
FSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFYFTCGAVAALAQVMSAPGSDIPMVGASGAVAGVMGAYLLLF
PKARILTLVPILFFFTFLEVPAFIIIGYWVLIQFLNATWLGGGELLRGGVAYFAHIGGFVAGVTFVLLARMGRRGGYGRL
>Mature_240_residues
MIPIKDYNPTRRFPLVSVAFIVLNVIVFILDRISGHYEPLIIETSRGLIRTRQFVGGLSADFALVPAALTSHPLLAWPTV
FSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFYFTCGAVAALAQVMSAPGSDIPMVGASGAVAGVMGAYLLLF
PKARILTLVPILFFFTFLEVPAFIIIGYWVLIQFLNATWLGGGELLRGGVAYFAHIGGFVAGVTFVLLARMGRRGGYGRL

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321538, Length=152, Percent_Identity=32.8947368421053, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26261; Mature: 26261

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIKDYNPTRRFPLVSVAFIVLNVIVFILDRISGHYEPLIIETSRGLIRTRQFVGGLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCC
DFALVPAALTSHPLLAWPTVFSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFY
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHCCCCEEEEH
FTCGAVAALAQVMSAPGSDIPMVGASGAVAGVMGAYLLLFPKARILTLVPILFFFTFLEV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
PAFIIIGYWVLIQFLNATWLGGGELLRGGVAYFAHIGGFVAGVTFVLLARMGRRGGYGRL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIPIKDYNPTRRFPLVSVAFIVLNVIVFILDRISGHYEPLIIETSRGLIRTRQFVGGLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCC
DFALVPAALTSHPLLAWPTVFSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFY
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHCCCCEEEEH
FTCGAVAALAQVMSAPGSDIPMVGASGAVAGVMGAYLLLFPKARILTLVPILFFFTFLEV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
PAFIIIGYWVLIQFLNATWLGGGELLRGGVAYFAHIGGFVAGVTFVLLARMGRRGGYGRL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA