| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is lptD [H]
Identifier: 78067507
GI number: 78067507
Start: 3175201
End: 3177561
Strand: Reverse
Name: lptD [H]
Synonym: Bcep18194_A6038
Alternate gene names: 78067507
Gene position: 3177561-3175201 (Counterclockwise)
Preceding gene: 78067510
Following gene: 78067506
Centisome position: 86.02
GC content: 65.69
Gene sequence:
>2361_bases ATGCCGCCCAAACCGCTATTCCCGAATGTTTTCCCCGGTGACGGGGCGCCGCGCAAACGGCGGCTCGCGCTCGCGCTCCT GGCCGTGCCTGGCCTCGTGCCGGCCGTGTCGTACGCGCAGCTGTCGGGCGCGGCCGCGCAGCCGCAGCCGCTCGACTCGC CGTGGGATCTGCGTCTCGCGCCCCAGCTCGAGGATCGCCCGCTGAAGGACGGCGCGAAGCCCGCCGCCTTCGTGATCGCC GACCACACGAGCGGCACGGCCGAGCAGGATCTTGCCGCGAAGGGTTCGGCCGAACTGCGGCGCGGTGACGTGGTCGTGAA GGCCGACGCGATCCACTACGATCAGGATACCGACATGGCCGATGCGTACGGCCAGGTCAGGATCAACAATTCCGGCACGT CGTTCGCGGGCCCCGAGGCGCACCTGAAGATCGAGGCGAACCAGGGCTTCATGACGGCGCCGAAGTATCACTTCAACATG ACGGGCGGGTCGGGCAGCGCGGAACGCGTCGACATGGTCGACAACGAGCGCTCGGTGTTCGTCAACGGCACCTACACCGC GTGCCAGTGCTCGACGAACCCCGCGTGGTACATCAAGGGCAGCCGCTTCGACTTCGATACGGGCGCCGACGAAGGCACCG CGCGTAACGGCGTGCTGTTCTTCCAGGGCGTGCCGATCTTCGCGAGCCCGTGGATGACGTTCCCGCTGTCGGGCGAGCGG CGCAGCGGCCTGCTGCCGCCGACGTTCGCGATGAACTCGAGCAACGGCTTCGAACTGTCGCTGCCGTACTACTTCAACAT CGCGCCGAACCGCGACCTGACGCTCACGCCACGCATCATCTCGCGGCGCGGCGTGATGACCGAGGCGACGTTCCGCTACC TGTCGCCGTCGTATTCGGGCACGTTTACGGCGAATTACCTGCCGGATGACCGGCTCGCGCACCGCAACCGTTACGCGATC TACTGGCAGCACCAGCAGAACTTCGGCGGCGGCTTCGGCGGCTACGTCTACTACAACAAGGTCTCGGACACTACGTATCC GGAAGACCTCGGGTCGACGAACCAGTTCGTCAACGGGACGCAGACGCTGTACCAGCAGGAAGCAGGCCTCACGTACAACA ACGGCCCGTGGTCGGTGCTCGCGCGCTACCAGCACTGGCAGACGCTGCCGCCGTCGATCGCGCCTTACAGCCGCGAGCCG CAGTTGAACGTGAAGTACACGAAGTACAACGTCGGCGGCTTCGACTTCGGCGCGGAAGCCGACTATTCGCGGTTCCGCAT CACGACGGCCGATGCGACCGAAGGCGACCGGATCGTCTTCAATCCGTATATCGCATACGGCGTGTACGGCCCCGGCTATT TCGTCGTGCCGAAGGTCCAGTACCACTTCGCGTCGTACGACCTGAACTACCTGTCGTCGACCACGCCGAACAGCCCGAAG CGCTTCACCGAGTCGATCCCGACCGTGAGCTTCGATACGGGGCTGATCTTCGACCGCTCGGTGCGCCTGTTCGGCCAGGA CTTCATCCAGACCCTCGAGCCGCGCCTGTACTACGTGTACACGCCGTATCGCGACCAGTCGAACGCCCCGCTGTTCGACT CCGCGGAATCGGACTTCGGCCTCGCGGAGATCTACCAGCCGAACACGTTCGTCGGCAACGACCGGATCGCCGATGCGAAC CGGATCACGGCCGGCCTGACGTCGCGCTTCATCGATCCGCGCACCGGCGACGAGCGTGCGCGCTTCGTGATCGCGCAGCA GTACTACTTCGCCGATCAGCGCGTCACGCTGAATTCCGGGCAGTCCGCCGTGCAGGCGCGCCACTCGGACCTGATCGTCG GCGCCGCGCTGAAGCTCGGCTCGGGCTTCATGTCGGAGACGGCGTTCCAGTACAACCAGAACAACAACCAGCTCGTGAAG TCGAGCGTCGGTTTCGGCTACAGCCCGGGCGAGCGCCGCGTGATCAACGTCGGCTACCGCTACACGCGATCGAACACCAC GCTCGACAACCAGCCGATCAACCAGTTCCTGATCTCCGCGCAATGGCCGCTCACGCGCCGCCTGTATGCGATCGGCCGCT TCAACTACGACCTCGCGGGCGATCGCGTAGTCGACGGTCTGGTCGGCTTACAATACGACGCGGACTGCTGGGCGCTCGGG GTCGGGGTGCAACGGGCAGCGAACGGCATCAATTCGTCGGGACAGCAGAACTCGTCGACGCGAGTCATGATGCAGCTGAC GCTCAAGGGCCTGTCGACCGTCGATAACGGCCTCGTGTCCGCATTCCGCGCCGGGGTGCCGGGCTACACGCCGCTGCCGC CGCCGCCGCCGCCGATGTCCCGCTTCAGCAACTACGAGTAA
Upstream 100 bases:
>100_bases GGTTTGCGCTCAGCCGCAGTCGCGGTGCGACGGTGCGGCCCGCCGCGCGCGAATGTGCCGCGACGGCGCGGTTGACAAGG GGCGATTCGCCAAACGATAG
Downstream 100 bases:
>100_bases CGCCGGCTTGTCTGCACCGGTCAGCACGATTTCAATGGAGTTCCAGTGGCAATGAAGAAAACCCTTCGTTTCGCGGCAGT CGTGTCCAGCCTCGCTGCGG
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 786; Mature: 785
Protein sequence:
>786_residues MPPKPLFPNVFPGDGAPRKRRLALALLAVPGLVPAVSYAQLSGAAAQPQPLDSPWDLRLAPQLEDRPLKDGAKPAAFVIA DHTSGTAEQDLAAKGSAELRRGDVVVKADAIHYDQDTDMADAYGQVRINNSGTSFAGPEAHLKIEANQGFMTAPKYHFNM TGGSGSAERVDMVDNERSVFVNGTYTACQCSTNPAWYIKGSRFDFDTGADEGTARNGVLFFQGVPIFASPWMTFPLSGER RSGLLPPTFAMNSSNGFELSLPYYFNIAPNRDLTLTPRIISRRGVMTEATFRYLSPSYSGTFTANYLPDDRLAHRNRYAI YWQHQQNFGGGFGGYVYYNKVSDTTYPEDLGSTNQFVNGTQTLYQQEAGLTYNNGPWSVLARYQHWQTLPPSIAPYSREP QLNVKYTKYNVGGFDFGAEADYSRFRITTADATEGDRIVFNPYIAYGVYGPGYFVVPKVQYHFASYDLNYLSSTTPNSPK RFTESIPTVSFDTGLIFDRSVRLFGQDFIQTLEPRLYYVYTPYRDQSNAPLFDSAESDFGLAEIYQPNTFVGNDRIADAN RITAGLTSRFIDPRTGDERARFVIAQQYYFADQRVTLNSGQSAVQARHSDLIVGAALKLGSGFMSETAFQYNQNNNQLVK SSVGFGYSPGERRVINVGYRYTRSNTTLDNQPINQFLISAQWPLTRRLYAIGRFNYDLAGDRVVDGLVGLQYDADCWALG VGVQRAANGINSSGQQNSSTRVMMQLTLKGLSTVDNGLVSAFRAGVPGYTPLPPPPPPMSRFSNYE
Sequences:
>Translated_786_residues MPPKPLFPNVFPGDGAPRKRRLALALLAVPGLVPAVSYAQLSGAAAQPQPLDSPWDLRLAPQLEDRPLKDGAKPAAFVIA DHTSGTAEQDLAAKGSAELRRGDVVVKADAIHYDQDTDMADAYGQVRINNSGTSFAGPEAHLKIEANQGFMTAPKYHFNM TGGSGSAERVDMVDNERSVFVNGTYTACQCSTNPAWYIKGSRFDFDTGADEGTARNGVLFFQGVPIFASPWMTFPLSGER RSGLLPPTFAMNSSNGFELSLPYYFNIAPNRDLTLTPRIISRRGVMTEATFRYLSPSYSGTFTANYLPDDRLAHRNRYAI YWQHQQNFGGGFGGYVYYNKVSDTTYPEDLGSTNQFVNGTQTLYQQEAGLTYNNGPWSVLARYQHWQTLPPSIAPYSREP QLNVKYTKYNVGGFDFGAEADYSRFRITTADATEGDRIVFNPYIAYGVYGPGYFVVPKVQYHFASYDLNYLSSTTPNSPK RFTESIPTVSFDTGLIFDRSVRLFGQDFIQTLEPRLYYVYTPYRDQSNAPLFDSAESDFGLAEIYQPNTFVGNDRIADAN RITAGLTSRFIDPRTGDERARFVIAQQYYFADQRVTLNSGQSAVQARHSDLIVGAALKLGSGFMSETAFQYNQNNNQLVK SSVGFGYSPGERRVINVGYRYTRSNTTLDNQPINQFLISAQWPLTRRLYAIGRFNYDLAGDRVVDGLVGLQYDADCWALG VGVQRAANGINSSGQQNSSTRVMMQLTLKGLSTVDNGLVSAFRAGVPGYTPLPPPPPPMSRFSNYE >Mature_785_residues PPKPLFPNVFPGDGAPRKRRLALALLAVPGLVPAVSYAQLSGAAAQPQPLDSPWDLRLAPQLEDRPLKDGAKPAAFVIAD HTSGTAEQDLAAKGSAELRRGDVVVKADAIHYDQDTDMADAYGQVRINNSGTSFAGPEAHLKIEANQGFMTAPKYHFNMT GGSGSAERVDMVDNERSVFVNGTYTACQCSTNPAWYIKGSRFDFDTGADEGTARNGVLFFQGVPIFASPWMTFPLSGERR SGLLPPTFAMNSSNGFELSLPYYFNIAPNRDLTLTPRIISRRGVMTEATFRYLSPSYSGTFTANYLPDDRLAHRNRYAIY WQHQQNFGGGFGGYVYYNKVSDTTYPEDLGSTNQFVNGTQTLYQQEAGLTYNNGPWSVLARYQHWQTLPPSIAPYSREPQ LNVKYTKYNVGGFDFGAEADYSRFRITTADATEGDRIVFNPYIAYGVYGPGYFVVPKVQYHFASYDLNYLSSTTPNSPKR FTESIPTVSFDTGLIFDRSVRLFGQDFIQTLEPRLYYVYTPYRDQSNAPLFDSAESDFGLAEIYQPNTFVGNDRIADANR ITAGLTSRFIDPRTGDERARFVIAQQYYFADQRVTLNSGQSAVQARHSDLIVGAALKLGSGFMSETAFQYNQNNNQLVKS SVGFGYSPGERRVINVGYRYTRSNTTLDNQPINQFLISAQWPLTRRLYAIGRFNYDLAGDRVVDGLVGLQYDADCWALGV GVQRAANGINSSGQQNSSTRVMMQLTLKGLSTVDNGLVSAFRAGVPGYTPLPPPPPPMSRFSNYE
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=734, Percent_Identity=27.9291553133515, Blast_Score=265, Evalue=8e-72,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR007543 [H]
Pfam domain/function: PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 87035; Mature: 86904
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPKPLFPNVFPGDGAPRKRRLALALLAVPGLVPAVSYAQLSGAAAQPQPLDSPWDLRLA CCCCCCCCCCCCCCCCCCHHHHEEEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEC PQLEDRPLKDGAKPAAFVIADHTSGTAEQDLAAKGSAELRRGDVVVKADAIHYDQDTDMA CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCEECCCEEEEEEEEECCCCCCHH DAYGQVRINNSGTSFAGPEAHLKIEANQGFMTAPKYHFNMTGGSGSAERVDMVDNERSVF CCCCEEEECCCCCCCCCCCEEEEEECCCCEEECCEEEEEECCCCCCCCEEEEECCCCEEE VNGTYTACQCSTNPAWYIKGSRFDFDTGADEGTARNGVLFFQGVPIFASPWMTFPLSGER EECCEEEEEECCCCEEEEECCEECCCCCCCCCCCCCCEEEEECCCEEECCCEEECCCCCC RSGLLPPTFAMNSSNGFELSLPYYFNIAPNRDLTLTPRIISRRGVMTEATFRYLSPSYSG CCCCCCCEEEECCCCCEEEECCEEEEECCCCCEEECHHHHHCCCCEEHHHHHHCCCCCCC TFTANYLPDDRLAHRNRYAIYWQHQQNFGGGFGGYVYYNKVSDTTYPEDLGSTNQFVNGT EEEECCCCCHHHHCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHCCCCCHHCCHH QTLYQQEAGLTYNNGPWSVLARYQHWQTLPPSIAPYSREPQLNVKYTKYNVGGFDFGAEA HHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC DYSRFRITTADATEGDRIVFNPYIAYGVYGPGYFVVPKVQYHFASYDLNYLSSTTPNSPK CCCEEEEEECCCCCCCEEEECCEEEEEECCCCEEEEEEEEEEEEEECCHHHCCCCCCCHH RFTESIPTVSFDTGLIFDRSVRLFGQDFIQTLEPRLYYVYTPYRDQSNAPLFDSAESDFG HHHHHCCCEEECCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC LAEIYQPNTFVGNDRIADANRITAGLTSRFIDPRTGDERARFVIAQQYYFADQRVTLNSG EEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEEECCC QSAVQARHSDLIVGAALKLGSGFMSETAFQYNQNNNQLVKSSVGFGYSPGERRVINVGYR CHHHHHHCCCEEEEEHHHHCCCHHHHHEEEECCCCCEEEEECCCCCCCCCCCEEEEECEE YTRSNTTLDNQPINQFLISAQWPLTRRLYAIGRFNYDLAGDRVVDGLVGLQYDADCWALG EECCCCCCCCCCCCHHEEECCCCHHHEEEEEECCCCCCCCCHHHHHHHCCEECCCEEEEE VGVQRAANGINSSGQQNSSTRVMMQLTLKGLSTVDNGLVSAFRAGVPGYTPLPPPPPPMS CCHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH RFSNYE HCCCCC >Mature Secondary Structure PPKPLFPNVFPGDGAPRKRRLALALLAVPGLVPAVSYAQLSGAAAQPQPLDSPWDLRLA CCCCCCCCCCCCCCCCCHHHHEEEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEC PQLEDRPLKDGAKPAAFVIADHTSGTAEQDLAAKGSAELRRGDVVVKADAIHYDQDTDMA CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCEECCCEEEEEEEEECCCCCCHH DAYGQVRINNSGTSFAGPEAHLKIEANQGFMTAPKYHFNMTGGSGSAERVDMVDNERSVF CCCCEEEECCCCCCCCCCCEEEEEECCCCEEECCEEEEEECCCCCCCCEEEEECCCCEEE VNGTYTACQCSTNPAWYIKGSRFDFDTGADEGTARNGVLFFQGVPIFASPWMTFPLSGER EECCEEEEEECCCCEEEEECCEECCCCCCCCCCCCCCEEEEECCCEEECCCEEECCCCCC RSGLLPPTFAMNSSNGFELSLPYYFNIAPNRDLTLTPRIISRRGVMTEATFRYLSPSYSG CCCCCCCEEEECCCCCEEEECCEEEEECCCCCEEECHHHHHCCCCEEHHHHHHCCCCCCC TFTANYLPDDRLAHRNRYAIYWQHQQNFGGGFGGYVYYNKVSDTTYPEDLGSTNQFVNGT EEEECCCCCHHHHCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHCCCCCHHCCHH QTLYQQEAGLTYNNGPWSVLARYQHWQTLPPSIAPYSREPQLNVKYTKYNVGGFDFGAEA HHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC DYSRFRITTADATEGDRIVFNPYIAYGVYGPGYFVVPKVQYHFASYDLNYLSSTTPNSPK CCCEEEEEECCCCCCCEEEECCEEEEEECCCCEEEEEEEEEEEEEECCHHHCCCCCCCHH RFTESIPTVSFDTGLIFDRSVRLFGQDFIQTLEPRLYYVYTPYRDQSNAPLFDSAESDFG HHHHHCCCEEECCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC LAEIYQPNTFVGNDRIADANRITAGLTSRFIDPRTGDERARFVIAQQYYFADQRVTLNSG EEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEEECCC QSAVQARHSDLIVGAALKLGSGFMSETAFQYNQNNNQLVKSSVGFGYSPGERRVINVGYR CHHHHHHCCCEEEEEHHHHCCCHHHHHEEEECCCCCEEEEECCCCCCCCCCCEEEEECEE YTRSNTTLDNQPINQFLISAQWPLTRRLYAIGRFNYDLAGDRVVDGLVGLQYDADCWALG EECCCCCCCCCCCCHHEEECCCCHHHEEEEEECCCCCCCCCHHHHHHHCCEECCCEEEEE VGVQRAANGINSSGQQNSSTRVMMQLTLKGLSTVDNGLVSAFRAGVPGYTPLPPPPPPMS CCHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH RFSNYE HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA