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The map label for this gene is ydcN [C]

Identifier: 78067487

GI number: 78067487

Start: 3151915

End: 3152616

Strand: Reverse

Name: ydcN [C]

Synonym: Bcep18194_A6018

Alternate gene names: 78067487

Gene position: 3152616-3151915 (Counterclockwise)

Preceding gene: 78067488

Following gene: 78067486

Centisome position: 85.34

GC content: 71.08

Gene sequence:

>702_bases
ATGTCTTCATCCCTGGCGCTCGTGCGCGACGTGTCTTCCTTCGAGTCCGGCAACGCCGCCGATGCGCGGGCGTCCGCGTC
GCTCGACGTTCTCGAACAGGTCGTTGGCGTGAACCTCGCGCGGTTGCGCGCCGAGCGGCAACTGTCGCTCGATGCGCTCG
CACGGCTGTCCGGCGTGTCGCGTGCGATGCTCGCGCAGATCGAGTCGGCGCGCAGCGTGCCGTCGATCAAGGTGCTCTGC
AAGATCGCCGCGGCGCTGAAGGTCTCGGTCGCCGCATTCCTGCGCCGCCATGCGGTGAATGGCTTCGAGCATCTGGCGGC
CGAGCGCGCGTCGCGGGTCGTCAGCTCGAACGGCCGCTTCTCGGCGCGCGCGCTGTACCCGGAAGGCGAGCCGGCCGCGG
CCGAATTCCACGAGCTGCGGATCGCGCCGCTGCATACGGAGCCCGGCGCCCGCCGTGCACCCGGCACGACGGTCAACCTC
GTCGTCAGCGAGGGCACGCTCGAAGTCAGCGTGCATGAGCGCCGCCAGTTGCTTGCCACCGGCGATGCGATCGTGTTCGA
TGCCGACCAGCCGTACAGCCTGCGCAACCCGGGCGACAGCGAAGCGCGTGCGTTTCGCGTGACGGTGAGCCCCGAGGTGC
CGCCGCGCTGGCTGGTGCCCGATGCGGCGCACGCGGCACATGCCGCGCACGCGGCCGGCTGA

Upstream 100 bases:

>100_bases
GGGTGATAGCGTCTCGATACGCGCCGTTGCTGGCGCAACCCGATTCCGATCCCGGCTTACCCCATACGCAGGGCTGCACA
AGCGGCCCGGAGGCAATGCT

Downstream 100 bases:

>100_bases
TCGGGCCACGCAGGTCGCACGGAAGCGGGCTGCGTTCGCGTCGTTCGGGCGCGATCGCGGGTCGTTCGTCGGCCGTTTGG
ACGATGCCGTTAGACGGAGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Transcriptional Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcription Regulator Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Regulator With Helix-Turn-Helix Motif; HTH-Type Transcriptional Regulator YdcN; Hth-Type Transcriptional Regulator; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator HTH_3 Family Protein; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSSSLALVRDVSSFESGNAADARASASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNL
VVSEGTLEVSVHERRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAHAAHAAG

Sequences:

>Translated_233_residues
MSSSLALVRDVSSFESGNAADARASASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNL
VVSEGTLEVSVHERRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAHAAHAAG
>Mature_232_residues
SSSLALVRDVSSFESGNAADARASASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCK
IAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLV
VSEGTLEVSVHERRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAHAAHAAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24691; Mature: 24560

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSLALVRDVSSFESGNAADARASASLDVLEQVVGVNLARLRAERQLSLDALARLSGVS
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE
SARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLVVSEGTLEVSVHERRQLLAT
EEEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEHHHHHHHHHC
GDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAHAAHAAG
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SSSLALVRDVSSFESGNAADARASASLDVLEQVVGVNLARLRAERQLSLDALARLSGVS
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE
SARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLVVSEGTLEVSVHERRQLLAT
EEEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEHHHHHHHHHC
GDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAHAAHAAG
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA