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The map label for this gene is ycfQ [H]

Identifier: 78067181

GI number: 78067181

Start: 2819973

End: 2820587

Strand: Direct

Name: ycfQ [H]

Synonym: Bcep18194_A5712

Alternate gene names: 78067181

Gene position: 2819973-2820587 (Clockwise)

Preceding gene: 78067179

Following gene: 78067183

Centisome position: 76.34

GC content: 68.62

Gene sequence:

>615_bases
ATGGCTGAACGGGGCCGACCGAGAAGCTTCGACAAGGAAGCGGCGCTGGAGCGTGCGATGGAGGTGTTCTGGCGCCTCGG
CTACGAAGGCGCATCGATGACCGACCTGACGGCCGCGATGGGCATCGCGTCGCCGAGCCTGTATGCGGCGTTCGGCAGCA
AGGAAGCGTTGTTCCGGCAAGCGCTCGAGCACTACGGCGCAACGGAAGGACGGGAAATCTGGGGAGGTGTCGAGCAGGCC
GGCAGCGCGCACGACGCCGTGCGGAACTACCTGATGGATACCGCACGCGTGTTCACGCGGCGGTCGAAGCCGGCAGGCTG
CCTGATCGTGCTGTCGGCGCTGCACCCGGCCGAGCGCTCCGATACGGTCCGGCAAACGCTGATCGCGATGCGCGAGCGCA
CGGTCGAGAACCTGCGCGAGCGCCTCAGGCAAGGTGTCGCGACCGGCGAGATCGCGGCACAAGCGAACCTCGACGCAATC
GCGCGGTACTACGTGACGGTCCAGCAGGGAATGTCGATCCAGGCGCGCGACGGTGCGAGCCGTCGCGATCTGGAGGCCGT
CGCACAAGCCGCGCTGGCTGCGTGGCCAGCGCTCGTCGGCACGGGCGGCGCGTAG

Upstream 100 bases:

>100_bases
CATTTATGTAACGACCGACACAGAATGTGGCAAGTTGCGCGACACAGTCAATTGATTTAATTTATCGATCGATACAGATA
TCTGCGAAGGAGCGGACGCA

Downstream 100 bases:

>100_bases
CGGCAGGACGCTACCGCCGCACCGTTACGTTACTGCTTCGCTGCGTGCTGCACGTCCTTCGACGCATGCCACACGCGATA
GCGCACATCAAAGCCGTCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MAERGRPRSFDKEAALERAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYGATEGREIWGGVEQA
GSAHDAVRNYLMDTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIAMRERTVENLRERLRQGVATGEIAAQANLDAI
ARYYVTVQQGMSIQARDGASRRDLEAVAQAALAAWPALVGTGGA

Sequences:

>Translated_204_residues
MAERGRPRSFDKEAALERAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYGATEGREIWGGVEQA
GSAHDAVRNYLMDTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIAMRERTVENLRERLRQGVATGEIAAQANLDAI
ARYYVTVQQGMSIQARDGASRRDLEAVAQAALAAWPALVGTGGA
>Mature_203_residues
AERGRPRSFDKEAALERAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYGATEGREIWGGVEQAG
SAHDAVRNYLMDTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIAMRERTVENLRERLRQGVATGEIAAQANLDAIA
RYYVTVQQGMSIQARDGASRRDLEAVAQAALAAWPALVGTGGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=203, Percent_Identity=37.9310344827586, Blast_Score=133, Evalue=7e-33,
Organism=Escherichia coli, GI87082397, Length=190, Percent_Identity=32.1052631578947, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22145; Mature: 22014

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERGRPRSFDKEAALERAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYGATEGREIWGGVEQAGSAHDAVRNYLMDTARVFTRRSKPAGCLIVLSALHPAERS
HHHHCCCCCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH
DTVRQTLIAMRERTVENLRERLRQGVATGEIAAQANLDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAVAQAALAAWPALVGTGGA
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AERGRPRSFDKEAALERAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYGATEGREIWGGVEQAGSAHDAVRNYLMDTARVFTRRSKPAGCLIVLSALHPAERS
HHHHCCCCCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH
DTVRQTLIAMRERTVENLRERLRQGVATGEIAAQANLDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAVAQAALAAWPALVGTGGA
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]