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The map label for this gene is ycfD [H]

Identifier: 78066866

GI number: 78066866

Start: 2465528

End: 2466748

Strand: Direct

Name: ycfD [H]

Synonym: Bcep18194_A5397

Alternate gene names: 78066866

Gene position: 2465528-2466748 (Clockwise)

Preceding gene: 78066864

Following gene: 78066867

Centisome position: 66.74

GC content: 65.93

Gene sequence:

>1221_bases
ATGCGCAACCGGTCTCAAGCCGAACCGCGGGATGCCGCTGCCGCCCCGTTCGGCGCGCCGCCTTCCGATCTTCCCACACC
GCTGCTCGGCGGTCTTACGCCGGCGCAATTCATGCGCGGCTACTGGCAGAAGAAGCCGCTCCTGATCCGCCAGGCGATCC
CCGGCGTCGCGTCACCCGTCACGCGCGACGCGCTGTTCGAGCTCGCAGCGGACTATGACGCGGAATCGCGACTGATCACC
CATTTTCGTAACAAGTGGCAACTTGAGCACGGCCCGTTCGAGCCAGGCTCGCTGCCGGCCGTCACGCGCAAGGCCTGGAC
CCTGCTCGTGCAGGGGCTCGACCTGCACGTCGATGCCGCGCGCGCCCTGCTCGACCGCTTCCGCTTCATCCCCGACGCGC
GTCTGGACGACCTGATGATCTCCTATGCGACGGACGGCGGCGGCGTCGGCGCGCACTTCGACTCATACGACGTATTCCTG
CTGCAGGTCGAAGGCCGGCGCCGCTGGCGCGTCGGCGCGCAGAAGGACCTGTCGCTGCAGCCGGACGTGCCACTGAAGAT
CCTCGAAAACTTCGAGCCGAGCGACGAATGGGTGCTGGAACCCGGCGACATGCTCTACCTGCCGCCGCACATCGCGCACG
ACGGCGTCGCCGAAGGCGAATGCATGACCTGCTCGATCGGCTTCCGGGCCCCGTCCGCCGGCGAGCTGGGCGCCCAGTTC
CTGTACTATCTCGCGGAGCGTGGCGGCCTGCGCGACAGTGGCGACGACGACCTTTACCGCGATCCGAAGCAGCCGGCCGT
CGACACGCCCGCCCAACTGCCCCCGGCGATGGTCGAGCGCGTTGCCGAGATCGTGGACGCGATCCGCTGGCGCAAGCGGG
ACGTCGCCGAATTCCTCGGCTGCTACCTGAGCGAGCCCAAACCGAACGTCGTTTTCGACCCGCCCGCCCGTCCGCTGTCC
GAGTCCGCGTTCATCACGCAAGCGTCACGTCGTGGCGTGTGTCTCGACAGAAGGGCCGCATTGATGTATAACGCGCGCTC
GTACTTCATTAATGGTGAAGAAGGACCGCTCGAGCAGGCCAGCGAATGGCTGCCCGAACTGGCCAATCAACGCCAGATGG
AGGCGAAACGGTTTGTAACACTATCCCGGGTTCCCTCAATGACAGCCTTATTGCACGAGTGGTATCGTGCGGGCTGGATA
CGGGTCGGAAACCGGAATTAG

Upstream 100 bases:

>100_bases
ATCAGATTGCCCTGTGCATCCGACAGCTTGTAAGTGACCGACACGACAGTGTTTTTTGCGATTTTCATCCAATTCTCCCA
AATACAAGTCTCATTATACG

Downstream 100 bases:

>100_bases
TGTGAGTCGCCCCGTATGCCCGTACGGATCAAATTCTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTC
GATAGGAAAGTGCATATAAT

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MRNRSQAEPRDAAAAPFGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVASPVTRDALFELAADYDAESRLIT
HFRNKWQLEHGPFEPGSLPAVTRKAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGAHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGDDDLYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKPNVVFDPPARPLS
ESAFITQASRRGVCLDRRAALMYNARSYFINGEEGPLEQASEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN

Sequences:

>Translated_406_residues
MRNRSQAEPRDAAAAPFGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVASPVTRDALFELAADYDAESRLIT
HFRNKWQLEHGPFEPGSLPAVTRKAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGAHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGDDDLYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKPNVVFDPPARPLS
ESAFITQASRRGVCLDRRAALMYNARSYFINGEEGPLEQASEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN
>Mature_406_residues
MRNRSQAEPRDAAAAPFGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVASPVTRDALFELAADYDAESRLIT
HFRNKWQLEHGPFEPGSLPAVTRKAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGAHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGDDDLYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKPNVVFDPPARPLS
ESAFITQASRRGVCLDRRAALMYNARSYFINGEEGPLEQASEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=370, Percent_Identity=33.7837837837838, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45493; Mature: 45493

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRSQAEPRDAAAAPFGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVASPV
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHH
TRDALFELAADYDAESRLITHFRNKWQLEHGPFEPGSLPAVTRKAWTLLVQGLDLHVDAA
HHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGAHFDSYDVFLLQVEGRRRWRVGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
CCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDSGDDDLYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKPNVVFDPPARPLSESAFITQASRRGVCLDRRAALMYNARSYFINGEEGPLEQA
HHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHH
SEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCC
>Mature Secondary Structure
MRNRSQAEPRDAAAAPFGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVASPV
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHH
TRDALFELAADYDAESRLITHFRNKWQLEHGPFEPGSLPAVTRKAWTLLVQGLDLHVDAA
HHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGAHFDSYDVFLLQVEGRRRWRVGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
CCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDSGDDDLYRDPKQPAVDTPAQLPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKPNVVFDPPARPLSESAFITQASRRGVCLDRRAALMYNARSYFINGEEGPLEQA
HHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHH
SEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]