| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is yoaA [H]
Identifier: 78066565
GI number: 78066565
Start: 2135443
End: 2137689
Strand: Reverse
Name: yoaA [H]
Synonym: Bcep18194_A5096
Alternate gene names: 78066565
Gene position: 2137689-2135443 (Counterclockwise)
Preceding gene: 78066566
Following gene: 78066563
Centisome position: 57.87
GC content: 68.27
Gene sequence:
>2247_bases TTGAATTCACCGCTTGAAGCCACCCCCGATGCCCGGCGCGATGTGTCGCCCGCCGGGCGCGCTCGTGCGCCTGAAGGCAC CTTTGAACTGAGCCGCAAGCGCGTCGACGAACTCGACACGATCTTCGGCGAAGGTGGCTTGCTGGCGCGCGCGCTCGACG GTTATCGGCCGCGTATGGCGCAGATCGAGATGGCGCGCGCGGTCGCGTCCGCGATGGAAGCGTCCGCGCGCCGGATGCCC GACCCCGAGATCTTCGAAACCCGCAAGCGGCCGGCGCGTCGCCTCGGCGATGGCGACAAGGCGGCCGAATCGGGCGCGGA TGCCGCCGCAACCGAGGCCGACAGCGATGCCGGCGACAACACGCTGATCGTCGAGGCCGGTACGGGTACCGGCAAGACCT ATGCGTACCTCGTGCCCGCGATGCTGTGGGGCGGCAAGGTGATCGTGTCGACCGGCACGAAACACCTGCAGGACCAGCTG TTCGCGCGCGACATCCCGACCGTGCGCAACGCGCTCGCGGTGCCGGTGTCGGTCGCGATGCTGAAGGGCCGTGCAAACTA CCTGTGCCACTACTACCTGCAACGCACGGCCGACAACGGCCGGTTGCCGTCGCGGCAGGATACGGCCTATCTGCAGGAAA TCGTCCGTTTCGCGAAGATCACGAAGAGCGGCGACAAGGCCGAACTCGCGAGCGTGCCGGAAACGGCGCCCGTGTGGTCG ATGGTCACGTCGACGCGCGACAACTGCCTCGGCCAGGAGTGCCCGCATTACAAGGACTGCTTCGTGATGCAGGCGCGGCG CGAAGCGCAGCAGGCCGACGTCGTCGTCGTCAACCATCACCTGTTCTTCGCGGACATCATGCTGCGCGATACGGGGATGG CCGAGCTGCTGCCGAACGCGAACACGGTCATCTTCGACGAAGCGCACCAGTTGCCGGAAACGGCGACGCTGTTCTTCGGC GAGACGCTGTCGACGACACAGATTCTCGAGCTCGCCCGCGACACGGTGGCGGAAGGCCTGAGCCATGCACGCGACGCGGT CGAGTGGGTGAAGCTCGGCGGCGATCTCGAGCGCGCGGCGCGCGACTTGCGCCTGGCGTTCGCGAACGACCAGATCGTCC GCATGTCGCTCGCCCAGCTCGGCGACGATCACCCGATGTTCGGCGCGCTCGACGCGCTCGAGGCTGCGCTCGACGCGTTG GCGTCGGCGCTTGCCAGCCAGGCCGAACGGGCGGAATCGCTCGGCGCGTGCCTGCGGCGCGCACGCGAGCTGCAGGATCT GCTGGCCGGCTGGGTCGCACCCGGCGCGACGGAAGCGGCGGCGAAGGCCGACGCAACGGCGGCCGGCGACAAGGCGGCAT CCGACGGCGATCCGAACGAGAAGGTGCGCTGGGTCGAAGTGTTCGCGCATACGGTCCAGCTGCACGAAACGCCGCTGTCG GTCGCGCCGATCTTTGCCAAGCAGCGCGCGGGCGTGCCGCGTGCATGGGTGTTCACGTCGGCCACGCTGTCGGTGCGCGG CGATTTCACGCACTATGCGGCGCAGATGGGCCTCAGCTCGCGTCGCTCGATGACGCTCGCAAGCCCGTTCGACTACCAGT CGCAAGGGCTGCTGTACGTGCCGCGCAACCTGCCGCAACCGTCTTCGCCAGCGTTTACCGATGCCGTCTTCGACGCCGCG CTGCCGGCGATCGAGGCGTCCGGTGGCGGTGTGTTCATGTTGTGCACGACGCTGCGCGCGGTCGACCGGATCGCGTCGAA GCTGCGTGACGTGATCGAATCGCGCGGCTGGAACACGCCACTGCTCGTGCAGGGCGATGCGAGCCGCACCGAACTGCTCG ACCGCTTCCGCGCGTATGGCAACGCGATCCTGGTCGGCAGCCAGAGTTTCTGGGAAGGCGTCGACGTGCGCGGCGACGCG CTGTCGCTCGTCGTGATCGACAAGCTGCCGTTTGCGCCGCCGGACGATCCGGTGCTGGCCGCGCGGCTCGACGCGCTGAC GAAGAAGGGGCTGAGCCCGTTCGCCGTGCACCAGTTGCCGCAGGCCGTGATTACGCTGAAGCAGGGCGCGGGCCGGCTGA TTCGCGCGGAGACGGATCGCGGCGTGCTGATGATCTGCGACACGCGGCTTGTCGACAAGCCCTACGGGCGCCGGATCTGG CAGAGCCTGCCGCCGTTCAAGCGGACCCGCGAGATCGCGGTCGTCCAGGACTTCTTCGACGATCACCGTTCGGCAAAGCG CACGTGA
Upstream 100 bases:
>100_bases ATCATTTTGCTGCAATCGCAGCTGGAACCGGATAAGCGCGCCTGAGCGCGGCCTGGCAAGCGCCGGCGCCGCCCGGGCGC TGGATACAGGAACGCTTGCC
Downstream 100 bases:
>100_bases CGGCGCGCGCGGCGATCGTCGCGCGATCGCACCGGCGCCGCCTGAGTGCGGCGCCAATAAAAAACCCGGCTCGATGGCCG GGTTTTTTGTTCGTGCAGCG
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MNSPLEATPDARRDVSPAGRARAPEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRMAQIEMARAVASAMEASARRMP DPEIFETRKRPARRLGDGDKAAESGADAAATEADSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQL FARDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPETAPVWS MVTSTRDNCLGQECPHYKDCFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPNANTVIFDEAHQLPETATLFFG ETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFANDQIVRMSLAQLGDDHPMFGALDALEAALDAL ASALASQAERAESLGACLRRARELQDLLAGWVAPGATEAAAKADATAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPLS VAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDAA LPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDA LSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIW QSLPPFKRTREIAVVQDFFDDHRSAKRT
Sequences:
>Translated_748_residues MNSPLEATPDARRDVSPAGRARAPEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRMAQIEMARAVASAMEASARRMP DPEIFETRKRPARRLGDGDKAAESGADAAATEADSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQL FARDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPETAPVWS MVTSTRDNCLGQECPHYKDCFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPNANTVIFDEAHQLPETATLFFG ETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFANDQIVRMSLAQLGDDHPMFGALDALEAALDAL ASALASQAERAESLGACLRRARELQDLLAGWVAPGATEAAAKADATAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPLS VAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDAA LPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDA LSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIW QSLPPFKRTREIAVVQDFFDDHRSAKRT >Mature_748_residues MNSPLEATPDARRDVSPAGRARAPEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRMAQIEMARAVASAMEASARRMP DPEIFETRKRPARRLGDGDKAAESGADAAATEADSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQL FARDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPETAPVWS MVTSTRDNCLGQECPHYKDCFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPNANTVIFDEAHQLPETATLFFG ETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFANDQIVRMSLAQLGDDHPMFGALDALEAALDAL ASALASQAERAESLGACLRRARELQDLLAGWVAPGATEAAAKADATAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPLS VAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDAA LPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDA LSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIW QSLPPFKRTREIAVVQDFFDDHRSAKRT
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=714, Percent_Identity=41.7366946778711, Blast_Score=493, Evalue=1e-140, Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=35.2697095435685, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR006935 [H]
Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 81362; Mature: 81362
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSPLEATPDARRDVSPAGRARAPEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRMA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHH QIEMARAVASAMEASARRMPDPEIFETRKRPARRLGDGDKAAESGADAAATEADSDAGDN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCC TLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFARDIPTVRNALAVPVSVAM EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHH LKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPETAPVWS HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH MVTSTRDNCLGQECPHYKDCFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPNA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCCCC NTVIFDEAHQLPETATLFFGETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAA CEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RDLRLAFANDQIVRMSLAQLGDDHPMFGALDALEAALDALASALASQAERAESLGACLRR HHHHHEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARELQDLLAGWVAPGATEAAAKADATAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPLS HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC VAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYV HHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEE PRNLPQPSSPAFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTP CCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC LLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVLA EEEECCCHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHH ARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIW HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHHH QSLPPFKRTREIAVVQDFFDDHRSAKRT HHCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNSPLEATPDARRDVSPAGRARAPEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRMA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHH QIEMARAVASAMEASARRMPDPEIFETRKRPARRLGDGDKAAESGADAAATEADSDAGDN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCC TLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFARDIPTVRNALAVPVSVAM EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHH LKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPETAPVWS HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH MVTSTRDNCLGQECPHYKDCFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPNA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCCCC NTVIFDEAHQLPETATLFFGETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAA CEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RDLRLAFANDQIVRMSLAQLGDDHPMFGALDALEAALDALASALASQAERAESLGACLRR HHHHHEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARELQDLLAGWVAPGATEAAAKADATAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPLS HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC VAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYV HHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEE PRNLPQPSSPAFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTP CCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC LLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVLA EEEECCCHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHH ARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIW HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHHH QSLPPFKRTREIAVVQDFFDDHRSAKRT HHCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]