| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is yhjG [H]
Identifier: 78066539
GI number: 78066539
Start: 2107778
End: 2110072
Strand: Reverse
Name: yhjG [H]
Synonym: Bcep18194_A5070
Alternate gene names: 78066539
Gene position: 2110072-2107778 (Counterclockwise)
Preceding gene: 78066542
Following gene: 78066537
Centisome position: 57.12
GC content: 67.1
Gene sequence:
>2295_bases ATGACGCTAACCCGAGCCATCGGCAAATCGGCTGCATGGATCGTCGGTATCGTCGCGGTGCTCATCGCGGCGGCCGGCGT CTTTCTCTTCGCCTTCGACTGGAATCGCGCGAAGCCGTGGGTCAACGAACAGGTCACGGCCGCACTCGGCCGCCCGTTCG CGATCAACGGCGACCTGAAGGTCGGCTGGCGCCGCCCCGACGGCGAAACTGGCTGGCGCGCCTGGGTGCCCTGGCCGAGC TTGACGGCCACGCAGCTCGAGATCGGCAACCCCGACTGGGCGAAGACACCCAAGTTCGTCACGCTCGATGCTGCGCACTT CGATCTCGCGATCCTGCCGCTGCTCGCGCATGAAATCGTGATTCCGTCGATCGACGTCGTGAATCCGGCCGTCGATCTCG AGCGGCTGGCCGACGGCCGCAACACGTGGACCTTCCAGTTCAAGCAATCGTCGCAGCCGTCGCCGTGGAAGGTGCGGCTC GACAGCTTCGGCTTCGCGAAGGGCACCGTCACGTATCGCGACGCAATCACGAAGGCCGACCTGAGCGTCGCGATCGATAC GCTCGGGCAGCCGATTCCGCTCGGCGACGTGCTGAAGGAGCAGGAGCAGACGTCGCGCGCGGCATCGGCGCAGCGTGTCG GCAAGCACGGTGCTGCGCAGTTGAGCGCGAAGGCCAACGCGGAGGCCGCGTCGAGCGCTTCCGCTGCGCAGGCTGCGAGT GCGGCGTCGGCAACGGGGGCTTCGGCCGCGTCTGCCGTGGTGTCGGCTTCGTCTTCTTCGTCCACCGCTTCGGCATCGGC TGCTGCCGCGTCTGGTGCAAGCGGCGCAAGCAGCGTCGCGGCGCCCGCGAAGCCGTCCGGCCCGACCTATGCGTTCGGGC TGAAAGTCGACGGCCGCTACAAGAATGTACCGATCAGCGGCACCGGCAAGCTGGGAGGTGTGCTCGCGATCCAGGACGCG TCGCAGCCGTTCCCGTTGCAGGCCGATGTGAAGGCCGGCGACACGCGGCTCGCGATCGTCGGCACGCTGACCGATCCGAT GCATCTCGCGGCCATCGACCTGCGGCTGTGGTTGCAGGGCACGTCGATGTCGCACCTTTACCAGCTGACCGGCATCACGC TGCCCGATACGCCGCCTTACGCGACGGAAGGCCGGCTGATCGGCAACTTCAAGCGCAAGGCCAGCACGTTCCGCTACGAG AACTTCAACGGCCGCGTCGGCGGCAGCGATCTCGGCGGCACGCTTGCCTACGAGCAGCGCGAGCCGCGGCCGAAGCTGTC GGGCGAGCTCGTGTCGAACCTGCTGCAGTTCTCCGATCTCGCGCCGGTGATCGGCGCGGATACGGCCGCGAGCAAAGCCA AGCGCGGCGACACGACGAAACAGCCGTCGAGCCGCGTGCTGCCGGTCGAGACGTTCCGCACCGACCGCTGGCGCGCACTC GACGCGGACGTCAAGTTCACGGGCCGCAAGCTGGTCAAGAGTTCGGACCTGCCGATCACCAACCTGTACACGCACATCGT GATGACGGACGGCGTGCTGTCGCTCGAGCCGCTGCAGTTCGGTGTCGCGGGCGGCACACTCGCAACGACCGCGCATCTCG ACGGCAGCGGTGCGCCGCTGAAGGGCCGCTTCACGGTGGCGGCGCGGCACCTGAAGCTCAAGCAGCTGTTCCCGGCGCAG AAGGTCATGCAGTCGGCGCTCGGCGAGATCAACGGCGATGCGTCGCTGTCGGCGACCGGCAACTCGCCGGCCGCGCTGGC CGCGACGTCGACCGGCGAAGTGAAGGCACTCGTGACGGACGGCCGCATCAGCCGCCTGCTGATGGAAGCGGCGGGGCTGA ACGTCGCGAACGTCGTCTACGAGAAGCTGTTCGGCAACAACGACGTGAAGATCAACTGCGCGGCGATCGACTTCGTCGCG ACCAACGGCATTCTCGACCCGAAGGTCTTCGCGCTTGATACGGACGACGCGCTGATCAACGTCGACGGCCCGATCAGCCT GCGCGACGAAACGCTGAACCTGAAGATCCACCCGCACACGAAGGGTTTCCGGATCTTCTCGCTGCGCTCGCCGCTGTATG CGAAGGGCACGTTCAAGAATCCGGACGTCGGCGTCGATGCGGGCGCACTTGCGTTGCGCGCCGGCGCGATGGTCGGCCTC GGGCTGATCAACCCGTTCGCGGCGTTGATTCCGCTGATCGCGCCGAGCAACAACCGCGATGTGCCGTGCTCGGAGCTGTT CGGTCAGATGAATGCGAAGGCGGCACAGCGGGCGGCGGCGAAAGTCGGCAAGTGA
Upstream 100 bases:
>100_bases TCATAATACCGATTGAAAAGCCGCGGGTGTCGTGCGCCGTTCGTCCACGCACGCGGCCCGGCATGGTGCGGCTACATTTC AGAACAACAACGGAACCGCC
Downstream 100 bases:
>100_bases CGGCGTCAGCGGCCCGCGCGCGCCCAGAGCAGCAGGACTTCGACCTCCCGGCCGCCGATCCGGACCGGTGCCGCGGGGCC GAGCTGCAGGCGATCGCCGT
Product: uncharacterized protein involved in outer membrane biogenesis, AsmA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 763
Protein sequence:
>764_residues MTLTRAIGKSAAWIVGIVAVLIAAAGVFLFAFDWNRAKPWVNEQVTAALGRPFAINGDLKVGWRRPDGETGWRAWVPWPS LTATQLEIGNPDWAKTPKFVTLDAAHFDLAILPLLAHEIVIPSIDVVNPAVDLERLADGRNTWTFQFKQSSQPSPWKVRL DSFGFAKGTVTYRDAITKADLSVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLSAKANAEAASSASAAQAAS AASATGASAASAVVSASSSSSTASASAAAASGASGASSVAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKLGGVLAIQDA SQPFPLQADVKAGDTRLAIVGTLTDPMHLAAIDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKRKASTFRYE NFNGRVGGSDLGGTLAYEQREPRPKLSGELVSNLLQFSDLAPVIGADTAASKAKRGDTTKQPSSRVLPVETFRTDRWRAL DADVKFTGRKLVKSSDLPITNLYTHIVMTDGVLSLEPLQFGVAGGTLATTAHLDGSGAPLKGRFTVAARHLKLKQLFPAQ KVMQSALGEINGDASLSATGNSPAALAATSTGEVKALVTDGRISRLLMEAAGLNVANVVYEKLFGNNDVKINCAAIDFVA TNGILDPKVFALDTDDALINVDGPISLRDETLNLKIHPHTKGFRIFSLRSPLYAKGTFKNPDVGVDAGALALRAGAMVGL GLINPFAALIPLIAPSNNRDVPCSELFGQMNAKAAQRAAAKVGK
Sequences:
>Translated_764_residues MTLTRAIGKSAAWIVGIVAVLIAAAGVFLFAFDWNRAKPWVNEQVTAALGRPFAINGDLKVGWRRPDGETGWRAWVPWPS LTATQLEIGNPDWAKTPKFVTLDAAHFDLAILPLLAHEIVIPSIDVVNPAVDLERLADGRNTWTFQFKQSSQPSPWKVRL DSFGFAKGTVTYRDAITKADLSVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLSAKANAEAASSASAAQAAS AASATGASAASAVVSASSSSSTASASAAAASGASGASSVAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKLGGVLAIQDA SQPFPLQADVKAGDTRLAIVGTLTDPMHLAAIDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKRKASTFRYE NFNGRVGGSDLGGTLAYEQREPRPKLSGELVSNLLQFSDLAPVIGADTAASKAKRGDTTKQPSSRVLPVETFRTDRWRAL DADVKFTGRKLVKSSDLPITNLYTHIVMTDGVLSLEPLQFGVAGGTLATTAHLDGSGAPLKGRFTVAARHLKLKQLFPAQ KVMQSALGEINGDASLSATGNSPAALAATSTGEVKALVTDGRISRLLMEAAGLNVANVVYEKLFGNNDVKINCAAIDFVA TNGILDPKVFALDTDDALINVDGPISLRDETLNLKIHPHTKGFRIFSLRSPLYAKGTFKNPDVGVDAGALALRAGAMVGL GLINPFAALIPLIAPSNNRDVPCSELFGQMNAKAAQRAAAKVGK >Mature_763_residues TLTRAIGKSAAWIVGIVAVLIAAAGVFLFAFDWNRAKPWVNEQVTAALGRPFAINGDLKVGWRRPDGETGWRAWVPWPSL TATQLEIGNPDWAKTPKFVTLDAAHFDLAILPLLAHEIVIPSIDVVNPAVDLERLADGRNTWTFQFKQSSQPSPWKVRLD SFGFAKGTVTYRDAITKADLSVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLSAKANAEAASSASAAQAASA ASATGASAASAVVSASSSSSTASASAAAASGASGASSVAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKLGGVLAIQDAS QPFPLQADVKAGDTRLAIVGTLTDPMHLAAIDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKRKASTFRYEN FNGRVGGSDLGGTLAYEQREPRPKLSGELVSNLLQFSDLAPVIGADTAASKAKRGDTTKQPSSRVLPVETFRTDRWRALD ADVKFTGRKLVKSSDLPITNLYTHIVMTDGVLSLEPLQFGVAGGTLATTAHLDGSGAPLKGRFTVAARHLKLKQLFPAQK VMQSALGEINGDASLSATGNSPAALAATSTGEVKALVTDGRISRLLMEAAGLNVANVVYEKLFGNNDVKINCAAIDFVAT NGILDPKVFALDTDDALINVDGPISLRDETLNLKIHPHTKGFRIFSLRSPLYAKGTFKNPDVGVDAGALALRAGAMVGLG LINPFAALIPLIAPSNNRDVPCSELFGQMNAKAAQRAAAKVGK
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=470, Percent_Identity=47.8723404255319, Blast_Score=457, Evalue=1e-129,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 80139; Mature: 80008
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTRAIGKSAAWIVGIVAVLIAAAGVFLFAFDWNRAKPWVNEQVTAALGRPFAINGDLK CCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCEEECCCEE VGWRRPDGETGWRAWVPWPSLTATQLEIGNPDWAKTPKFVTLDAAHFDLAILPLLAHEIV EEEECCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH IPSIDVVNPAVDLERLADGRNTWTFQFKQSSQPSPWKVRLDSFGFAKGTVTYRDAITKAD CCCCHHCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHHHHH LSVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLSAKANAEAASSASAAQAAS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHCCHHHHHHHH AASATGASAASAVVSASSSSSTASASAAAASGASGASSVAAPAKPSGPTYAFGLKVDGRY HHCCCCCHHHHHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE KNVPISGTGKLGGVLAIQDASQPFPLQADVKAGDTRLAIVGTLTDPMHLAAIDLRLWLQG ECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEEC TSMSHLYQLTGITLPDTPPYATEGRLIGNFKRKASTFRYENFNGRVGGSDLGGTLAYEQR CCHHHEEEECCEECCCCCCCCCCCCEEECHHHHHHHEEEECCCCCCCCCCCCCCEEECCC EPRPKLSGELVSNLLQFSDLAPVIGADTAASKAKRGDTTKQPSSRVLPVETFRTDRWRAL CCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCCCCEEEHHHCCCCCEEEE DADVKFTGRKLVKSSDLPITNLYTHIVMTDGVLSLEPLQFGVAGGTLATTAHLDGSGAPL CCCCEECCHHHHCCCCCCHHHHEEEEEEECCCEEECCEEEECCCCCEEEEEEECCCCCCC KGRFTVAARHLKLKQLFPAQKVMQSALGEINGDASLSATGNSPAALAATSTGEVKALVTD CCEEEEEEHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCEEEEEEC GRISRLLMEAAGLNVANVVYEKLFGNNDVKINCAAIDFVATNGILDPKVFALDTDDALIN CHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCEEEE VDGPISLRDETLNLKIHPHTKGFRIFSLRSPLYAKGTFKNPDVGVDAGALALRAGAMVGL CCCCCEEECCEEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH GLINPFAALIPLIAPSNNRDVPCSELFGQMNAKAAQRAAAKVGK HHHHHHHHHHEEECCCCCCCCCHHHHHHHHCHHHHHHHHHHCCC >Mature Secondary Structure TLTRAIGKSAAWIVGIVAVLIAAAGVFLFAFDWNRAKPWVNEQVTAALGRPFAINGDLK CCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCEEECCCEE VGWRRPDGETGWRAWVPWPSLTATQLEIGNPDWAKTPKFVTLDAAHFDLAILPLLAHEIV EEEECCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH IPSIDVVNPAVDLERLADGRNTWTFQFKQSSQPSPWKVRLDSFGFAKGTVTYRDAITKAD CCCCHHCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHHHHH LSVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLSAKANAEAASSASAAQAAS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHCCHHHHHHHH AASATGASAASAVVSASSSSSTASASAAAASGASGASSVAAPAKPSGPTYAFGLKVDGRY HHCCCCCHHHHHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE KNVPISGTGKLGGVLAIQDASQPFPLQADVKAGDTRLAIVGTLTDPMHLAAIDLRLWLQG ECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEEEC TSMSHLYQLTGITLPDTPPYATEGRLIGNFKRKASTFRYENFNGRVGGSDLGGTLAYEQR CCHHHEEEECCEECCCCCCCCCCCCEEECHHHHHHHEEEECCCCCCCCCCCCCCEEECCC EPRPKLSGELVSNLLQFSDLAPVIGADTAASKAKRGDTTKQPSSRVLPVETFRTDRWRAL CCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCCCCEEEHHHCCCCCEEEE DADVKFTGRKLVKSSDLPITNLYTHIVMTDGVLSLEPLQFGVAGGTLATTAHLDGSGAPL CCCCEECCHHHHCCCCCCHHHHEEEEEEECCCEEECCEEEECCCCCEEEEEEECCCCCCC KGRFTVAARHLKLKQLFPAQKVMQSALGEINGDASLSATGNSPAALAATSTGEVKALVTD CCEEEEEEHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCEEEEEEC GRISRLLMEAAGLNVANVVYEKLFGNNDVKINCAAIDFVATNGILDPKVFALDTDDALIN CHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCEEEE VDGPISLRDETLNLKIHPHTKGFRIFSLRSPLYAKGTFKNPDVGVDAGALALRAGAMVGL CCCCCEEECCEEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH GLINPFAALIPLIAPSNNRDVPCSELFGQMNAKAAQRAAAKVGK HHHHHHHHHHEEECCCCCCCCCHHHHHHHHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]