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The map label for this gene is yagI [H]

Identifier: 78065779

GI number: 78065779

Start: 1253473

End: 1254108

Strand: Reverse

Name: yagI [H]

Synonym: Bcep18194_A4308

Alternate gene names: 78065779

Gene position: 1254108-1253473 (Counterclockwise)

Preceding gene: 78065780

Following gene: 78065778

Centisome position: 33.95

GC content: 70.6

Gene sequence:

>636_bases
GTGTCGACAACTGTAACCCATCCCGCGTCGCGGGACCGTGAATCGTCGCCCGACGAGATCACCGCCCTCGCCCGCGGCCT
CGCCGTGCTGCGCCGCATCGCGGCGGCCGACGCGCCTGTCAGCAACCGCGAGCTGACCGAACTGACCGGCATCCCGAAGC
CGACCGTCTCGCGCATCACCGCGACGCTCGTCAGCGCCGGCTTCCTGTTCCAGTTGCCCGACAGCGAGCGCTTCGTGCTC
ACCGCGTCGGTGCTCGAACTGAGCCACGGCTTCCTGCGCAACTTCGACATCCGCGCGCGTTCGCGGCCGTTCATGATCGA
ACTGGCCGAACGCACGTCGCTGTCCGTGCACCTCGCGGTGCGCGACCGGCTCGACATGGTCGCGATCGACGTGATCCGGC
CGCGCTCGGCCGTGCTCGTCACGCGCCTCGAAATCGGCTCGCGGATGGACATCGCGCGCACCGCAGTGGGCCGCGCGTAT
CTCGCCGCACTCGAGGAAGACGAACGCCGCCTGTTGCTCGAGTCGCTGCGCACCACGGCGGGCGACGACTGGCCGCATGT
GTCCGCGCCCCCGCGCTGGACGACGCGATGCGCGACGGCCACGCGATCGCGATCGGCGAATGGCGCGAGGGCCTGA

Upstream 100 bases:

>100_bases
ATCCAATGACCGGTTCGCCAGCAGAACATGCATCCTTTGACAATAGTCCTACAATACCAACAAAATTGAAATCGAGTTTC
GGAATTAGAGAGAATCCCTC

Downstream 100 bases:

>100_bases
ATGCCGTCGCGGCCGGTTTCGTCGGCCCGTCGGGGCAGCGCTATTCGGTGAATTGCGGTGGCGCGTCGCACCAGTGCCCG
CCCGAATGGCTGCACGAACA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSTTVTHPASRDRESSPDEITALARGLAVLRRIAAADAPVSNRELTELTGIPKPTVSRITATLVSAGFLFQLPDSERFVL
TASVLELSHGFLRNFDIRARSRPFMIELAERTSLSVHLAVRDRLDMVAIDVIRPRSAVLVTRLEIGSRMDIARTAVGRAY
LAALEEDERRLLLESLRTTAGDDWPHVSAPPRWTTRCATATRSRSANGARA

Sequences:

>Translated_211_residues
MSTTVTHPASRDRESSPDEITALARGLAVLRRIAAADAPVSNRELTELTGIPKPTVSRITATLVSAGFLFQLPDSERFVL
TASVLELSHGFLRNFDIRARSRPFMIELAERTSLSVHLAVRDRLDMVAIDVIRPRSAVLVTRLEIGSRMDIARTAVGRAY
LAALEEDERRLLLESLRTTAGDDWPHVSAPPRWTTRCATATRSRSANGARA
>Mature_210_residues
STTVTHPASRDRESSPDEITALARGLAVLRRIAAADAPVSNRELTELTGIPKPTVSRITATLVSAGFLFQLPDSERFVLT
ASVLELSHGFLRNFDIRARSRPFMIELAERTSLSVHLAVRDRLDMVAIDVIRPRSAVLVTRLEIGSRMDIARTAVGRAYL
AALEEDERRLLLESLRTTAGDDWPHVSAPPRWTTRCATATRSRSANGARA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=161, Percent_Identity=27.9503105590062, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87082359, Length=175, Percent_Identity=28, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI145693096, Length=200, Percent_Identity=27, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788131, Length=169, Percent_Identity=27.2189349112426, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 23226; Mature: 23095

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTVTHPASRDRESSPDEITALARGLAVLRRIAAADAPVSNRELTELTGIPKPTVSRIT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHH
ATLVSAGFLFQLPDSERFVLTASVLELSHGFLRNFDIRARSRPFMIELAERTSLSVHLAV
HHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEE
RDRLDMVAIDVIRPRSAVLVTRLEIGSRMDIARTAVGRAYLAALEEDERRLLLESLRTTA
CCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDDWPHVSAPPRWTTRCATATRSRSANGARA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STTVTHPASRDRESSPDEITALARGLAVLRRIAAADAPVSNRELTELTGIPKPTVSRIT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHH
ATLVSAGFLFQLPDSERFVLTASVLELSHGFLRNFDIRARSRPFMIELAERTSLSVHLAV
HHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEE
RDRLDMVAIDVIRPRSAVLVTRLEIGSRMDIARTAVGRAYLAALEEDERRLLLESLRTTA
CCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDDWPHVSAPPRWTTRCATATRSRSANGARA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]