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The map label for this gene is 78065740

Identifier: 78065740

GI number: 78065740

Start: 1200836

End: 1201516

Strand: Reverse

Name: 78065740

Synonym: Bcep18194_A4268

Alternate gene names: NA

Gene position: 1201516-1200836 (Counterclockwise)

Preceding gene: 78065743

Following gene: 78065739

Centisome position: 32.53

GC content: 69.31

Gene sequence:

>681_bases
ATGGCGCCGCGCCCCGGCTACCATTTCGTCCGATCGAGCCCCAGGATGTCGTCTGCCCGTCCCGCGCCGCACCGGCGCTT
CTCCCGCCTCATCCGCACGGCCGCGGCCCTCGCCGCCGCCGTGGCACTCGCCGCGTGCACGCACGACGAGCCACGCTGGA
ACCTCACCAACGTGACCGGCCACCTGCCCGACCTGTCGTTCACGCTGACGGGCGGCGACGGCCACCCCGTTGACGCCGAT
GCATTCCACGGCCAGGTTGCGCTCGTCTACTTCGGCTACACGCACTGCCCCGATGTCTGCCCCGAAACGATGGCACGGCT
GATGGAAGTGCTCACGAAGCTCGGCCCGCAGGCAAACAACGTGCGCATCCTGTTCGTGTCGGTCGACCCTGCGCGCGACA
CGCCGCAGGCCATGCAATCGTATGTCGCCGCGTTCGATGCCGCGCATGCGCGCGGCCTGACCGGCACCGACCGCCAGATC
GAATCGCTCGCGAAGCGCTATCGCGTCGCGTACCAGATGGAAAAGCGCGATCCGTCGGGCGGCTACGAAGTCACGCACAG
CTCGGCCGTCTACATCTTCGACGCGAGCGGCCGCGCCCGCCTGCTTGCGACCGACCGCGACTCGCCCGACGCCATCGCCG
CCGATGTGCGCCGGATCATCGACACCGCCTCCACTACCTGA

Upstream 100 bases:

>100_bases
CAACTGCGACATATTGCCCCGCTCGCCCGTCGCGTACGGGTTTCGAAAGGACGCCGGTGCGCGAATTGCGCTACAGTCGC
AACCGCCTGCCGCGCGACGC

Downstream 100 bases:

>100_bases
ATTCATCCCGACATGAAAACGAAAACGACCCTCAAGACGCTCGCCCTCCTCGCCGCGCTGTGCGCAGGCGCCCACGCGTA
TGCCGCCGGCGCGATCACTG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MAPRPGYHFVRSSPRMSSARPAPHRRFSRLIRTAAALAAAVALAACTHDEPRWNLTNVTGHLPDLSFTLTGGDGHPVDAD
AFHGQVALVYFGYTHCPDVCPETMARLMEVLTKLGPQANNVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDRQI
ESLAKRYRVAYQMEKRDPSGGYEVTHSSAVYIFDASGRARLLATDRDSPDAIAADVRRIIDTASTT

Sequences:

>Translated_226_residues
MAPRPGYHFVRSSPRMSSARPAPHRRFSRLIRTAAALAAAVALAACTHDEPRWNLTNVTGHLPDLSFTLTGGDGHPVDAD
AFHGQVALVYFGYTHCPDVCPETMARLMEVLTKLGPQANNVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDRQI
ESLAKRYRVAYQMEKRDPSGGYEVTHSSAVYIFDASGRARLLATDRDSPDAIAADVRRIIDTASTT
>Mature_225_residues
APRPGYHFVRSSPRMSSARPAPHRRFSRLIRTAAALAAAVALAACTHDEPRWNLTNVTGHLPDLSFTLTGGDGHPVDADA
FHGQVALVYFGYTHCPDVCPETMARLMEVLTKLGPQANNVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDRQIE
SLAKRYRVAYQMEKRDPSGGYEVTHSSAVYIFDASGRARLLATDRDSPDAIAADVRRIIDTASTT

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI281182722, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI281182716, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI153791313, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4759068, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=137, Percent_Identity=31.3868613138686, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319498, Length=134, Percent_Identity=37.3134328358209, Blast_Score=105, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=127, Percent_Identity=31.496062992126, Blast_Score=82, Evalue=6e-17,
Organism=Drosophila melanogaster, GI19920710, Length=152, Percent_Identity=32.2368421052632, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24624; Mature: 24493

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRPGYHFVRSSPRMSSARPAPHRRFSRLIRTAAALAAAVALAACTHDEPRWNLTNVTG
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
HLPDLSFTLTGGDGHPVDADAFHGQVALVYFGYTHCPDVCPETMARLMEVLTKLGPQANN
CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
VRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDRQIESLAKRYRVAYQMEKRDPSG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GYEVTHSSAVYIFDASGRARLLATDRDSPDAIAADVRRIIDTASTT
CEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APRPGYHFVRSSPRMSSARPAPHRRFSRLIRTAAALAAAVALAACTHDEPRWNLTNVTG
CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
HLPDLSFTLTGGDGHPVDADAFHGQVALVYFGYTHCPDVCPETMARLMEVLTKLGPQANN
CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
VRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDRQIESLAKRYRVAYQMEKRDPSG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GYEVTHSSAVYIFDASGRARLLATDRDSPDAIAADVRRIIDTASTT
CEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]