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The map label for this gene is rfaC [H]

Identifier: 78065472

GI number: 78065472

Start: 926309

End: 927337

Strand: Direct

Name: rfaC [H]

Synonym: Bcep18194_A4000

Alternate gene names: 78065472

Gene position: 926309-927337 (Clockwise)

Preceding gene: 78065471

Following gene: 78065473

Centisome position: 25.08

GC content: 70.85

Gene sequence:

>1029_bases
TTGTCGCCGGCTGCCTGCCGGCGTTTTTTCAGCGTGCAAAAGATCCTGATCGTGCGCGTGTCGTCGCTGGGCGACGTCGT
GCACAACATGCCGGTGATCGCCGATATCCGGCGCCGCCACCCCAATGCGCAGATCGACTGGCTCGTCGAGGAAAGCTTCG
TCGACCTGGTCAAGCTCGTCGACGGCGTGCGCAACGTGCTGCCGTTCTCGCTGCGCCGCTGGCGCAAGAAGCCGTTCTCG
GGCGCCACGTGGCGCGAGATCCGTGCGTTCCGCCAGCGCCTCGCGGCCGAGCAGTACGACCTCGTGATCGACTGTCAGGG
CCTCATCAAGACGGCCTGGGTCGCCAGCTGGGCGCGTGGCCCGCTCGTCGGGCTCGGCAACCGCACCGACGGCGCCGGCT
ACGAGTGGCCCGTGCGCTTCTTCTATCGCAAGCGCGTGCCGATCGCGCCGCGCACGCACGTCGTCGAGCGCTCGCGGCAA
CTCGTCGCGGCCGCGCTGGACGACCCGGCGCCGACGCCGGCCGATCCGGTCGACTTCGGCCTCGATACGCGCGCGGCGGC
GCTCGCGGTGGCCGCGCTCGGCCTGAACCTGCCGGTGCCGTACGTGGTGTTCGTCCACGCGACGTCGCGTGCCGACAAGC
AATGGCCGGACGCCGCGTGGATCGAGCTCGGCCAGGCCCTCGTGCGGCGCGGCGCGTCGCTCGTGCTGCCGTGGGGCAAC
GACGCGGAACGCGCGACCAGCGAGCGGCTCGCAAAAGAGTTCGGCGCGGCGGCGATCGTGCCGCCGCGGCTGTCGCTGCC
GGCGGTGGTCGGGCTGATCGACGGCGCGGCCGCCACCGTCGGGGTTGATACAGGTCTGGTTCACATCGCGGCCGCGCTGA
AGCGTCCGACGGTCGAACTGTACAATTTCGCGACGGCCTGGCGGACCGGCGGCTACTGGTCGCCGAACGTCGTCAATCTC
GGCACGGCGGGGCAACCCCCGTCGATCGCGCAGGTGAAGTCGGCGCTCGCGGGCTTCGGTCTCCTGTAA

Upstream 100 bases:

>100_bases
TATCAACTGCTCGTGAACCGGTTGACTGCTACTAATTCAGTCCGACCTCAGTTTTTCGCCTGATCGGCTCCCCGGGCGGG
ATAAAATCCCCCCTTTATGC

Downstream 100 bases:

>100_bases
CGCTGTCACACGTGCGAACCCGCGCGAACCCACGCGAACCGAACATGAGCGAATCCCAGATCATCGAAGTCCCGTCCGCC
GACTGGAGCGGACACAACCT

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSPAACRRFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPNAQIDWLVEESFVDLVKLVDGVRNVLPFSLRRWRKKPFS
GATWREIRAFRQRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQ
LVAAALDDPAPTPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGN
DAERATSERLAKEFGAAAIVPPRLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNL
GTAGQPPSIAQVKSALAGFGLL

Sequences:

>Translated_342_residues
MSPAACRRFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPNAQIDWLVEESFVDLVKLVDGVRNVLPFSLRRWRKKPFS
GATWREIRAFRQRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQ
LVAAALDDPAPTPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGN
DAERATSERLAKEFGAAAIVPPRLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNL
GTAGQPPSIAQVKSALAGFGLL
>Mature_341_residues
SPAACRRFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPNAQIDWLVEESFVDLVKLVDGVRNVLPFSLRRWRKKPFSG
ATWREIRAFRQRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQL
VAAALDDPAPTPADPVDFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGND
AERATSERLAKEFGAAAIVPPRLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLG
TAGQPPSIAQVKSALAGFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=309, Percent_Identity=37.5404530744337, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37284; Mature: 37153

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAACRRFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPNAQIDWLVEESFVDLVKLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
DGVRNVLPFSLRRWRKKPFSGATWREIRAFRQRLAAEQYDLVIDCQGLIKTAWVASWARG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHCCC
PLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQLVAAALDDPAPTPADPVDFG
CEEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGN
CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
DAERATSERLAKEFGAAAIVPPRLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVEL
CHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCHHH
YNFATAWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL
HHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SPAACRRFFSVQKILIVRVSSLGDVVHNMPVIADIRRRHPNAQIDWLVEESFVDLVKLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
DGVRNVLPFSLRRWRKKPFSGATWREIRAFRQRLAAEQYDLVIDCQGLIKTAWVASWARG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHCCC
PLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQLVAAALDDPAPTPADPVDFG
CEEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQALVRRGASLVLPWGN
CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
DAERATSERLAKEFGAAAIVPPRLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVEL
CHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCHHH
YNFATAWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL
HHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1527014; 11677609; 1657881 [H]