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The map label for this gene is rpoE [H]

Identifier: 78065417

GI number: 78065417

Start: 865971

End: 866486

Strand: Direct

Name: rpoE [H]

Synonym: Bcep18194_A3943

Alternate gene names: 78065417

Gene position: 865971-866486 (Clockwise)

Preceding gene: 78065416

Following gene: 78065418

Centisome position: 23.44

GC content: 70.35

Gene sequence:

>516_bases
ATGAGCTACGAATCGGATCTGCTGGTGTGGTTGCCGCATCTCACGCGCTATGCGCGCGCGCTGACGGGCGACCGGGCCTG
GGCGGACGATCTCGTGCAGGACACGCTCGAGCGTGCGCTGAACCGCCCGCCGCGCGACTGCGGCAACCTGCGCGCATGGC
TGCTGACGCTGCTGCGGCACCGCTTCATCGACCAGTTGCGCGCGCGCCACGAGATCGCGGTCGACGATGCGACGGCACCG
TGGCAGACGATGGCCGCGCCGGCCGGCGAAATCGGCGGCCTGGTGCTGCGCGACGTGCAGCGCGCGCTGTACCGGTTGCC
GGTCGAACAGCGCGAGGTGCTGCTGCTGGTCGCGCTCGAGGAATTGAGCTATCGCGATGCCGCGGAGGTGCTCGGCGTCC
CGGTGGGCACCGTGATGTCGCGGCTCGCACGGGCACGCGGGCAGATGCGCGCGCTGCTGTCGGACGAGCCGTCGGCGCAC
GGCACGGCTTCACTACGAGTGATCGGGAAGACATGA

Upstream 100 bases:

>100_bases
GAAGCAGGATCGCAAGCCCGGCGACGCGGGCGGCGACGGGATCGGCGGCATGTGGCACGTCGCGCGTCCGTAACTGCACG
GCGGTGCGCGAGGCATCCTG

Downstream 100 bases:

>100_bases
TGGACGATCCGCACAAGCCTTCGAACGAGCGGGACGACGATGCGTCGGCGCAACTGCTGTCCGCGCTGCTGGACGGCGAG
CTGTCCGGGCAAGAGCGTCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDCGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPAGEIGGLVLRDVQRALYRLPVEQREVLLLVALEELSYRDAAEVLGVPVGTVMSRLARARGQMRALLSDEPSAH
GTASLRVIGKT

Sequences:

>Translated_171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDCGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPAGEIGGLVLRDVQRALYRLPVEQREVLLLVALEELSYRDAAEVLGVPVGTVMSRLARARGQMRALLSDEPSAH
GTASLRVIGKT
>Mature_170_residues
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDCGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAPW
QTMAAPAGEIGGLVLRDVQRALYRLPVEQREVLLLVALEELSYRDAAEVLGVPVGTVMSRLARARGQMRALLSDEPSAHG
TASLRVIGKT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19157; Mature: 19026

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDCGNLRAWLLTLLRH
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPAGEIGGLVLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAEVLGVPVGTVMSRLARARGQMRALLSDEPSAHGTASLRVIGKT
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDCGNLRAWLLTLLRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPAGEIGGLVLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAEVLGVPVGTVMSRLARARGQMRALLSDEPSAHGTASLRVIGKT
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]