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The map label for this gene is rbfA [H]

Identifier: 78048392

GI number: 78048392

Start: 3225915

End: 3226307

Strand: Reverse

Name: rbfA [H]

Synonym: XCV2836

Alternate gene names: 78048392

Gene position: 3226307-3225915 (Counterclockwise)

Preceding gene: 78048393

Following gene: 78048391

Centisome position: 62.3

GC content: 65.14

Gene sequence:

>393_bases
ATGCCAACCAAATCATTCCATCGCACCGACCGCGTGTCCGCGCAGGTGCGTCGCGACCTCGGCACGATCGTGCACGCGGC
CGTGCGCGACCATGGGCTGCCGTCGGTCAGCGTGTCCGACGTCGAAATCAGTCGCGACCTGGCGCATGCCAAGGTCTTTG
TCACCGCGCTGCAGCAGGAGCGTTCGGCCGAAGCGGTCAAGGGGCTCAAGGAAATCGCCGGCCAGCTGCGTACCCAGTTG
GCGCGCGCGATGAAGCTGCGCCACGTGCCCGAGCTGCACTTCCATTACGACGATTCGGTCGATCGCGGCGAACGCATCGA
CAATCTGCTGCGTGACCTGGACGACGTTGGCCCCGAGGCCACGTCCAGCGATGAAGATGCCGAACAGCGCTGA

Upstream 100 bases:

>100_bases
GGTCCAATGCAGGTTCTGCAAGGCGAGGGCGGCATGGCCGCCCGCGTTTGTTTTTGGCTTCGGTGCCAACTGGCCCTCCG
AATCAACCAGGTCCACGACC

Downstream 100 bases:

>100_bases
GCGCTGTCACGGCCTGCCGCATCTGCCGCGGCCCTGATTCCCGCAGGCGCGCACTGCGCCTGATTCGAGCACCGATCTTT
TGAAACCCCGCATCGTCTAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQL
ARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR

Sequences:

>Translated_130_residues
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQL
ARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR
>Mature_129_residues
PTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQLA
RAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=40.5405405405405, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14560; Mature: 14429

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
TSSDEDAEQR
CCCCCCCCCC
>Mature Secondary Structure 
PTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
TSSDEDAEQR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]