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The map label for this gene is ygdH [H]

Identifier: 78048378

GI number: 78048378

Start: 3209984

End: 3211369

Strand: Reverse

Name: ygdH [H]

Synonym: XCV2822

Alternate gene names: 78048378

Gene position: 3211369-3209984 (Counterclockwise)

Preceding gene: 78048379

Following gene: 78048377

Centisome position: 62.01

GC content: 64.43

Gene sequence:

>1386_bases
ATGGAACTCAGCAGTACGGCAGCACGGGCGCTGCCGGTGGTGGATGCGCGGATCTACCCGCGTGGTGGTCTGGATGTGTT
GTCCAAGGCAGAAGTGGCCCGGTTGCGCGATGCATCCAGCGGTGGCATGCATGAGCTGTTGCGCCGCTGTGCGCTGGCCG
TGCTGACCAGCGGAAGCGCATCGGACGACCCGCGCGCTGCGCGCGATCTCTACCCGGATTTCGACATCCAGGTGAATCAG
CAGGATCGCGGCATCCGCATCGATCTGATCAACGCACCGGCAATGGCTTTCGTCGATGGCGAGATCATCCGCGGCGTGGC
CGAACTGTTGTTTGCCGTCGTCCGCGATCTCGCTTACATGGCCATCGAGCTCGAAGCGCAACGCGCGGATCTCGACACCA
GCGAAGGCATCACCAATGCCGTGTTCGGCCAGCTGCGTAATGCGCGCATCCTGCAGCCCTTGGATCCGAACCTGGTCGTG
TGCTGGGGCGGCCATTCCATCTCGCGCGATGAATACCTTTACACCAAGCAGGTCGGCTACGAGCTTGGCTTGCGCGGGCT
GGATATCTGCACCGGCTGCGGCCCGGGCGCCATGAAGGGGCCGATGAAGGGCGCCACCATCGCGCATGCCAAGCAGCGCA
AGCACAATACCCGCTACATCGGCGTCACCGAGCCAGGCATCATCGCCGCCGAATCGCCGAACCCGATCGTCAACCATCTG
GTGATCATGCCGGACATCGAGAAGCGCCTTGAGGCCTTCGTCCGCATCGGACATGGCATCCTAGTGTTCCCGGGCGGTGT
CGGCACCGCGGAGGAAATTCTCTACCTGCTCGGCATCCTGCTACGCGAAGAAAACGCGAACGTGCCGTTCCCGCTGATCC
TCACCGGCCCGACCATCGCCGCGCCGTACTTCGAGCAGATCGACCGTTTCATTCGCCTCACCCTAGGCGACGCTGCCGCC
TCGCGCTACGAGATCATCGTCGGCGACCCGGTCGCCGTCGCGCGCTGTATGGCCGAAGGGGTCCACGGAGTGCGCGCGCA
CCGCAAGGACCAGAAGGACTCGTATTACTTCAACTGGTCCGTGCACATCCCGCTCGAGTACCAGCAGCCCTTCGAGCCCA
GCCACGAAGCGATGGCCGCGCTGGACCTGCACCACGGCCGCCCGGCGCCGGCCCTGGCCGCCGACCTGCGCCGCGCCTTC
TCCGGCATCGTCGCCGGCAACGTCAAGGAAGACGGCATGCGCCGCATCGAGGAATTCGGCCCCTTCGAAATCAACGGCGA
TCCCGAGATCATGCAGGCCCTGGATGCGCTGCTGCGCGGCTTCGTTGAGCAGCGCCGGATGAAGATCTCGGGGGACTATC
GGCCTTGTTATCGGGTGGTGACTTAA

Upstream 100 bases:

>100_bases
CTAGCGTGTCGATGTTTGCAAAAACGGCCGGTGTCTCCCGGCCGTTTTCTTTTGTGCGGGTGAGTACGCTAAAGTTCCGT
GCATACGACAGGAGCATGCT

Downstream 100 bases:

>100_bases
AGGTTGGTGGGGATCTGGGAAAGGCCGGCGTCGTTTGTCGGCCATTCCTACCGTTTGTCTGCAGTAGATTGCGTTAGGCC
TGAAGCTTGACGATGCTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MELSSTAARALPVVDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQ
QDRGIRIDLINAPAMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVV
CWGGHSISRDEYLYTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHL
VIMPDIEKRLEAFVRIGHGILVFPGGVGTAEEILYLLGILLREENANVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAA
SRYEIIVGDPVAVARCMAEGVHGVRAHRKDQKDSYYFNWSVHIPLEYQQPFEPSHEAMAALDLHHGRPAPALAADLRRAF
SGIVAGNVKEDGMRRIEEFGPFEINGDPEIMQALDALLRGFVEQRRMKISGDYRPCYRVVT

Sequences:

>Translated_461_residues
MELSSTAARALPVVDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQ
QDRGIRIDLINAPAMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVV
CWGGHSISRDEYLYTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHL
VIMPDIEKRLEAFVRIGHGILVFPGGVGTAEEILYLLGILLREENANVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAA
SRYEIIVGDPVAVARCMAEGVHGVRAHRKDQKDSYYFNWSVHIPLEYQQPFEPSHEAMAALDLHHGRPAPALAADLRRAF
SGIVAGNVKEDGMRRIEEFGPFEINGDPEIMQALDALLRGFVEQRRMKISGDYRPCYRVVT
>Mature_461_residues
MELSSTAARALPVVDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQ
QDRGIRIDLINAPAMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVV
CWGGHSISRDEYLYTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHL
VIMPDIEKRLEAFVRIGHGILVFPGGVGTAEEILYLLGILLREENANVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAA
SRYEIIVGDPVAVARCMAEGVHGVRAHRKDQKDSYYFNWSVHIPLEYQQPFEPSHEAMAALDLHHGRPAPALAADLRRAF
SGIVAGNVKEDGMRRIEEFGPFEINGDPEIMQALDALLRGFVEQRRMKISGDYRPCYRVVT

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=450, Percent_Identity=55.5555555555556, Blast_Score=503, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50627; Mature: 50627

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSSTAARALPVVDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSA
CCCCHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
SDDPRAARDLYPDFDIQVNQQDRGIRIDLINAPAMAFVDGEIIRGVAELLFAVVRDLAYM
CCCCCHHHHCCCCCCEEECCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHH
AIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYLYTKQVGY
HEEEEHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCEEEHHHHHH
ELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHL
HHCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHEE
VIMPDIEKRLEAFVRIGHGILVFPGGVGTAEEILYLLGILLREENANVPFPLILTGPTIA
EECCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
APYFEQIDRFIRLTLGDAAASRYEIIVGDPVAVARCMAEGVHGVRAHRKDQKDSYYFNWS
CHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
VHIPLEYQQPFEPSHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGMRRIEEFG
EEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
PFEINGDPEIMQALDALLRGFVEQRRMKISGDYRPCYRVVT
CEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEECC
>Mature Secondary Structure
MELSSTAARALPVVDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSA
CCCCHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
SDDPRAARDLYPDFDIQVNQQDRGIRIDLINAPAMAFVDGEIIRGVAELLFAVVRDLAYM
CCCCCHHHHCCCCCCEEECCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHH
AIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYLYTKQVGY
HEEEEHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCEEEHHHHHH
ELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHL
HHCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHEE
VIMPDIEKRLEAFVRIGHGILVFPGGVGTAEEILYLLGILLREENANVPFPLILTGPTIA
EECCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
APYFEQIDRFIRLTLGDAAASRYEIIVGDPVAVARCMAEGVHGVRAHRKDQKDSYYFNWS
CHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
VHIPLEYQQPFEPSHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGMRRIEEFG
EEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
PFEINGDPEIMQALDALLRGFVEQRRMKISGDYRPCYRVVT
CEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]