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The map label for this gene is ppdD [C]

Identifier: 78048377

GI number: 78048377

Start: 3209341

End: 3209859

Strand: Reverse

Name: ppdD [C]

Synonym: XCV2821

Alternate gene names: 78048377

Gene position: 3209859-3209341 (Counterclockwise)

Preceding gene: 78048378

Following gene: 78048376

Centisome position: 61.98

GC content: 58.19

Gene sequence:

>519_bases
ATGTTAGTTGTCCGTTCGCGTGGGTTCACCCTGATTGAGCTCATGGTAACCGTGGCCGTGCTCGCGATCGTAGCTTCCAT
TGGTTACCCGAGTTTCCAAGGAGTCCTGCGATCAAATCGGGCGGCTGCCGCCAATAACGAGCTAATGGCTTTGTTGAATC
TCTCCAGGACCGAGGCCATACGGAATGGTCAGGGTGGAGGCGTGTGTGGTAGCTCCAATGGGACCAGCTGCGACGGTAGC
TGGAGTGGGGGAGTCATGGCCTGGAGTGACTCCAACGGCAACGGCACCTTTGACGCAGGAGAAGCAGTGCTACGCTACTC
GACCGGCAATCCTCGGCTTGTTGTCCAGGGACCCACCACTGGGACGGTGATCGCGTTTGATGCGCGTGGGCGCCGCCGCG
CAGCTGCAGACCAGAAAGTCACTCTTCAGCCGGATCAGTGCGGGGGGCAGCCCCTGAGAAGATCATTGACCGTGAATGCA
TCCGGTCAAATCCGTAGCAAAAAAGAGGCTTGTGTATGA

Upstream 100 bases:

>100_bases
CCGGCGTCGTTTGTCGGCCATTCCTACCGTTTGTCTGCAGTAGATTGCGTTAGGCCTGAAGCTTGACGATGCTGTCAAAA
CCAACGCTGGGGAGCGTCTA

Downstream 100 bases:

>100_bases
AGAAGGTCCCTCACACTAGTGCACGGTCGTCGCGAGGCTTCACTTTGATCGAAGTGTTGATCGCGATCCTCGTGCTGGCC
TTCGGTTTACTTGGGTTCGC

Product: putative type IV pilus assembly protein FimT

Products: NA

Alternate protein names: Type IV Pilus Assembly Protein FimT; Fimbrial Protein FimT; Type 4 Fimbrial Biogenesis Protein FimU

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLVVRSRGFTLIELMVTVAVLAIVASIGYPSFQGVLRSNRAAAANNELMALLNLSRTEAIRNGQGGGVCGSSNGTSCDGS
WSGGVMAWSDSNGNGTFDAGEAVLRYSTGNPRLVVQGPTTGTVIAFDARGRRRAAADQKVTLQPDQCGGQPLRRSLTVNA
SGQIRSKKEACV

Sequences:

>Translated_172_residues
MLVVRSRGFTLIELMVTVAVLAIVASIGYPSFQGVLRSNRAAAANNELMALLNLSRTEAIRNGQGGGVCGSSNGTSCDGS
WSGGVMAWSDSNGNGTFDAGEAVLRYSTGNPRLVVQGPTTGTVIAFDARGRRRAAADQKVTLQPDQCGGQPLRRSLTVNA
SGQIRSKKEACV
>Mature_172_residues
MLVVRSRGFTLIELMVTVAVLAIVASIGYPSFQGVLRSNRAAAANNELMALLNLSRTEAIRNGQGGGVCGSSNGTSCDGS
WSGGVMAWSDSNGNGTFDAGEAVLRYSTGNPRLVVQGPTTGTVIAFDARGRRRAAADQKVTLQPDQCGGQPLRRSLTVNA
SGQIRSKKEACV

Specific function: Not Yet Known. [C]

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17919; Mature: 17919

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVRSRGFTLIELMVTVAVLAIVASIGYPSFQGVLRSNRAAAANNELMALLNLSRTEAI
CEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHH
RNGQGGGVCGSSNGTSCDGSWSGGVMAWSDSNGNGTFDAGEAVLRYSTGNPRLVVQGPTT
HCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCC
GTVIAFDARGRRRAAADQKVTLQPDQCGGQPLRRSLTVNASGQIRSKKEACV
CEEEEEECCCCCCCCCCCEEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLVVRSRGFTLIELMVTVAVLAIVASIGYPSFQGVLRSNRAAAANNELMALLNLSRTEAI
CEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHH
RNGQGGGVCGSSNGTSCDGSWSGGVMAWSDSNGNGTFDAGEAVLRYSTGNPRLVVQGPTT
HCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCC
GTVIAFDARGRRRAAADQKVTLQPDQCGGQPLRRSLTVNASGQIRSKKEACV
CEEEEEECCCCCCCCCCCEEEECCHHCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA