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The map label for this gene is gumD [H]

Identifier: 78048341

GI number: 78048341

Start: 3164337

End: 3165791

Strand: Reverse

Name: gumD [H]

Synonym: XCV2785

Alternate gene names: 78048341

Gene position: 3165791-3164337 (Counterclockwise)

Preceding gene: 78048342

Following gene: 78048340

Centisome position: 61.13

GC content: 61.17

Gene sequence:

>1455_bases
ATGCTTTTGGCAGACTTGAGTAGCGCGACTTACACGACTTCCTCGCCGCGATTGTTGTCCAAATATTCGGCTGCGGCCGA
TCTGGTTCTGCGCGTCTTCGACCTGACCATGGTTGTGGTGTCCGGTCTGGTCGCTTATCGCATCGTGTTTGGCTCCTGGG
TGCCGGCCGCGCCGTATCGGCTGGCGATCGCCACCACGCTGCTGTACTCGGTGATCTGCTTTGCGTTGTTCCCGTTGTAC
CGCAGCTGGCGCGGCCGTGGACTGTTGAGCGAACTGATGGTGCTGGGCGGCGCATTCGGCGGTGTGTTCGCGCTGTTTGC
CGTGCATGCGCTGATCGTGCAGGTGGGCGAGCAGGTGTCGCGCGGTTGGATCGGCTTGTGGTTCGTCGGTGGCCTGGCCT
CGCTGGTGGCGGCACGCACGGTGCTGCGCGGCTTCCTCAACCATCTGCGTACCCAGGGCGTGGACGTGCAACGCGTGGTG
GTGGTGGGACTGCGTCACCCGGTGATGAAAATCAACCACTACCTGAGCCGTAACTCGTGGGTCGGCATGAACCTGGTCGG
TTATTTTCGCACTCCTTACGACATTGCCGTGACCGAACAGCGTCAGTCATTGCCGTGCCTGGGCGAGCCGGACGCGTTGA
TCGATTATCTGAAGGAAAACCAGGTCGAGCAGGTGTGGATCTCGCTGCCGCTGGGCGAACGCGACCACATCAAGCAGCTG
TTGCAGCGCCTGGATCGTTACCCGATCAACGTCAAGCTGGTGCCTGACCTGTTCGATTTCGGTCTGCTCAATCAGTCTGG
CGAACAGATCGGCAACGTGCCGGTGATCAATCTGCGCCAGGGCGGGGTGGACCGCGACAATTATTTCGTGGTGGCCAAGG
CGTTGCAGGACAAGATCCTGGCCGTGATCGCGCTGCTTGGCCTGTGGCCGCTGATGGCCGCCATTGCCGTGGGCGTCAAG
TTGAGCTCGCCCGGCCCGGTGTTCTTCCGCCAGCGCCGTCATGGCCTGGGTGGCCGCGAGTTCTACATGTTCAAGTTCCG
CTCGATGCGTGTGCACGACGACCATGGCACGACGATCCAGCAGGCGACCAAGAATGACGCACGTATTACCCGTTTCGGTG
CATTCCTGCGTCGTAGCAGCTTGGACGAATTGCCGCAGATCTTCAACGTGCTGGGTGGCAGCATGTCGATCGTCGGGCCG
CGCCCGCACGCTGCGCAGCACAACACGCACTACGAAAAGCTGATCAACCACTACATGCAGCGTCACTACGTCAAGCCTGG
CATCACCGGTTGGGCGCAGGTGAACGGCTTCCGTGGCGAAACCCCGGAACTGCGGACGATGAAGAAGCGTATCCAGTACG
ACCTCGATTACATCCGCCGTTGGTCGTTGTGGCTGGACATCCGCATCATCGTGCTGACCGCTGTGCGCGTGCTCGGACAG
AAGACCGCGTACTGA

Upstream 100 bases:

>100_bases
AGGTTCTACCGCGGTGATCGCTTGGCGGAGATGATTGAAAGCTCGCGTGCGATTCGTATGTTCCCCCGCATGCGTCGTAT
CGAGTTTGGAGGACATCCCC

Downstream 100 bases:

>100_bases
TGATGGTGGGGAGCGTGCGAGCAGGCGCGTTCGGCGCCGCGGGCGGCTGCATTGCAGCCGCTCCTTTCAAGCGGGCATCT
GCATGCTGATTCGAATGAGC

Product: xanthan biosynthesis glycosyltransferase GumD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MLLADLSSATYTTSSPRLLSKYSAAADLVLRVFDLTMVVVSGLVAYRIVFGSWVPAAPYRLAIATTLLYSVICFALFPLY
RSWRGRGLLSELMVLGGAFGGVFALFAVHALIVQVGEQVSRGWIGLWFVGGLASLVAARTVLRGFLNHLRTQGVDVQRVV
VVGLRHPVMKINHYLSRNSWVGMNLVGYFRTPYDIAVTEQRQSLPCLGEPDALIDYLKENQVEQVWISLPLGERDHIKQL
LQRLDRYPINVKLVPDLFDFGLLNQSGEQIGNVPVINLRQGGVDRDNYFVVAKALQDKILAVIALLGLWPLMAAIAVGVK
LSSPGPVFFRQRRHGLGGREFYMFKFRSMRVHDDHGTTIQQATKNDARITRFGAFLRRSSLDELPQIFNVLGGSMSIVGP
RPHAAQHNTHYEKLINHYMQRHYVKPGITGWAQVNGFRGETPELRTMKKRIQYDLDYIRRWSLWLDIRIIVLTAVRVLGQ
KTAY

Sequences:

>Translated_484_residues
MLLADLSSATYTTSSPRLLSKYSAAADLVLRVFDLTMVVVSGLVAYRIVFGSWVPAAPYRLAIATTLLYSVICFALFPLY
RSWRGRGLLSELMVLGGAFGGVFALFAVHALIVQVGEQVSRGWIGLWFVGGLASLVAARTVLRGFLNHLRTQGVDVQRVV
VVGLRHPVMKINHYLSRNSWVGMNLVGYFRTPYDIAVTEQRQSLPCLGEPDALIDYLKENQVEQVWISLPLGERDHIKQL
LQRLDRYPINVKLVPDLFDFGLLNQSGEQIGNVPVINLRQGGVDRDNYFVVAKALQDKILAVIALLGLWPLMAAIAVGVK
LSSPGPVFFRQRRHGLGGREFYMFKFRSMRVHDDHGTTIQQATKNDARITRFGAFLRRSSLDELPQIFNVLGGSMSIVGP
RPHAAQHNTHYEKLINHYMQRHYVKPGITGWAQVNGFRGETPELRTMKKRIQYDLDYIRRWSLWLDIRIIVLTAVRVLGQ
KTAY
>Mature_484_residues
MLLADLSSATYTTSSPRLLSKYSAAADLVLRVFDLTMVVVSGLVAYRIVFGSWVPAAPYRLAIATTLLYSVICFALFPLY
RSWRGRGLLSELMVLGGAFGGVFALFAVHALIVQVGEQVSRGWIGLWFVGGLASLVAARTVLRGFLNHLRTQGVDVQRVV
VVGLRHPVMKINHYLSRNSWVGMNLVGYFRTPYDIAVTEQRQSLPCLGEPDALIDYLKENQVEQVWISLPLGERDHIKQL
LQRLDRYPINVKLVPDLFDFGLLNQSGEQIGNVPVINLRQGGVDRDNYFVVAKALQDKILAVIALLGLWPLMAAIAVGVK
LSSPGPVFFRQRRHGLGGREFYMFKFRSMRVHDDHGTTIQQATKNDARITRFGAFLRRSSLDELPQIFNVLGGSMSIVGP
RPHAAQHNTHYEKLINHYMQRHYVKPGITGWAQVNGFRGETPELRTMKKRIQYDLDYIRRWSLWLDIRIIVLTAVRVLGQ
KTAY

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=430, Percent_Identity=38.3720930232558, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362
- InterPro:   IPR017475
- InterPro:   IPR017473 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 54560; Mature: 54560

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLADLSSATYTTSSPRLLSKYSAAADLVLRVFDLTMVVVSGLVAYRIVFGSWVPAAPYR
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LAIATTLLYSVICFALFPLYRSWRGRGLLSELMVLGGAFGGVFALFAVHALIVQVGEQVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RGWIGLWFVGGLASLVAARTVLRGFLNHLRTQGVDVQRVVVVGLRHPVMKINHYLSRNSW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCC
VGMNLVGYFRTPYDIAVTEQRQSLPCLGEPDALIDYLKENQVEQVWISLPLGERDHIKQL
CCCEEHEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
LQRLDRYPINVKLVPDLFDFGLLNQSGEQIGNVPVINLRQGGVDRDNYFVVAKALQDKIL
HHHHHCCCCEEEECCHHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCEEEHHHHHHHHH
AVIALLGLWPLMAAIAVGVKLSSPGPVFFRQRRHGLGGREFYMFKFRSMRVHDDHGTTIQ
HHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCHHH
QATKNDARITRFGAFLRRSSLDELPQIFNVLGGSMSIVGPRPHAAQHNTHYEKLINHYMQ
HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH
RHYVKPGITGWAQVNGFRGETPELRTMKKRIQYDLDYIRRWSLWLDIRIIVLTAVRVLGQ
HHCCCCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAY
CCCC
>Mature Secondary Structure
MLLADLSSATYTTSSPRLLSKYSAAADLVLRVFDLTMVVVSGLVAYRIVFGSWVPAAPYR
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LAIATTLLYSVICFALFPLYRSWRGRGLLSELMVLGGAFGGVFALFAVHALIVQVGEQVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RGWIGLWFVGGLASLVAARTVLRGFLNHLRTQGVDVQRVVVVGLRHPVMKINHYLSRNSW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCC
VGMNLVGYFRTPYDIAVTEQRQSLPCLGEPDALIDYLKENQVEQVWISLPLGERDHIKQL
CCCEEHEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
LQRLDRYPINVKLVPDLFDFGLLNQSGEQIGNVPVINLRQGGVDRDNYFVVAKALQDKIL
HHHHHCCCCEEEECCHHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCEEEHHHHHHHHH
AVIALLGLWPLMAAIAVGVKLSSPGPVFFRQRRHGLGGREFYMFKFRSMRVHDDHGTTIQ
HHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCHHH
QATKNDARITRFGAFLRRSSLDELPQIFNVLGGSMSIVGPRPHAAQHNTHYEKLINHYMQ
HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH
RHYVKPGITGWAQVNGFRGETPELRTMKKRIQYDLDYIRRWSLWLDIRIIVLTAVRVLGQ
HHCCCCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8759852; 9097040; 9278503 [H]