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The map label for this gene is secF [H]

Identifier: 78048248

GI number: 78048248

Start: 3048075

End: 3049043

Strand: Reverse

Name: secF [H]

Synonym: XCV2692

Alternate gene names: 78048248

Gene position: 3049043-3048075 (Counterclockwise)

Preceding gene: 78048249

Following gene: 78048246

Centisome position: 58.88

GC content: 61.3

Gene sequence:

>969_bases
ATGAAAATTTTTCCGCTTCATCTGATTCCCAACGACACCAAGATCGATTTCATGAGCTGGCGCAAGCCGGTGCTGATTTT
GATGCTGGTGCTGGCAGTCGCCTCGGTCGGCATCATCGTCGGCAAGGGTTTCAACTACGCGCTGGAATTCACCGGCGGCA
CGCTGGTACAGACCTCGTTCCAGAAGACCGTGGACGTGGATCAGGTGCGCGAAAGGCTGTCCAAGGCCGGCTTCGAAAAC
GCCCAGGTGCAGAACGCCCGCGGCGGTAATGAAGTCATGATTCGCCTGCAGCCGCATGGCCAGAACAACAATCGCGACGA
TGCCGCTCGCACCGTTGCCGAAGATGTGCGCAAGGCGGTGACCAGCGATGAGAATCCGGCCACCGTGCAGCCTGGCGAAT
TCGTCGGCCCGCAGGTCGGCAAGGATCTGGCCTTGAACGGCGTGTATGCCACGGTGTTCATGCTGGTGGGCTTTTTGATC
TACATCGCGTTCCGCTTCGAGTGGAAGTTCGCGGTGGTCGCCAGCCTGACCGCGTTGTTCGATCTGCTGGTCACCGTGGC
CTTCGTGTCGCTGACCGGCCGCGAGTTCGACCTGACCGTGCTGGCCGGCCTGCTGTCGGTGATGGGCTTTGCGATCAACG
ACATCATCGTGGTGTTCGACCGCGTGCGCGAAAACTTCCGTGCCCTGCGCGTGGAGCCGCTGGAAGTGCTCAACCGCTCG
ATCAACCAGACGCTGTCGCGCACGGTGATCACCGCGGTGATGTTCTTCCTGTCGGCACTGGCGTTGTACATCTACGGCGG
CGAATCGATGGAAGGCCTGGCCGAGACGCACATGATTGGTGCGGTGATCGTGGTGATCTCCTCGGTGATCGTGGCCGTGC
CGATGCTGAGCATCGGGCCGTTCGCGGTGACCAAGCAGGACCTGCTGCCCAAGGCCAAGGATGTGGAGGCGCTGGCGCGC
CGTCCTTGA

Upstream 100 bases:

>100_bases
TCGCTATTTAATGCGAGTCCCTCGCAAGAGCCCGTCTGTAATGCGAGTCCCTCGCGAGAGCCCGCACATCCATGTGCGGA
CTGCTTAGGAAGATCTTTCA

Downstream 100 bases:

>100_bases
TGGGTTGGCAAGCGGTGTGACGAGAAACCGCGCATCGCGCGGTTTTTTCGTTTCTGGCGTTGGGCGTCGTGACTGCACGG
TTATGCGCTGTGACGCCACG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSFQKTVDVDQVRERLSKAGFEN
AQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAVTSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLI
YIAFRFEWKFAVVASLTALFDLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPLEVLNRS
INQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAVPMLSIGPFAVTKQDLLPKAKDVEALAR
RP

Sequences:

>Translated_322_residues
MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSFQKTVDVDQVRERLSKAGFEN
AQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAVTSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLI
YIAFRFEWKFAVVASLTALFDLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPLEVLNRS
INQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAVPMLSIGPFAVTKQDLLPKAKDVEALAR
RP
>Mature_322_residues
MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSFQKTVDVDQVRERLSKAGFEN
AQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAVTSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLI
YIAFRFEWKFAVVASLTALFDLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPLEVLNRS
INQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAVPMLSIGPFAVTKQDLLPKAKDVEALAR
RP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=279, Percent_Identity=38.7096774193548, Blast_Score=201, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35307; Mature: 35307

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF
CCEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCEEEHHHH
QKTVDVDQVRERLSKAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV
HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPLEVLNRS
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
INQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAVPMLSIGP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FAVTKQDLLPKAKDVEALARRP
CCCCHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF
CCEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCEEEHHHH
QKTVDVDQVRERLSKAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV
HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPLEVLNRS
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
INQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAVPMLSIGP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FAVTKQDLLPKAKDVEALARRP
CCCCHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]