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The map label for this gene is nth [H]

Identifier: 78047179

GI number: 78047179

Start: 1836807

End: 1837517

Strand: Reverse

Name: nth [H]

Synonym: XCV1623

Alternate gene names: 78047179

Gene position: 1837517-1836807 (Counterclockwise)

Preceding gene: 78047180

Following gene: 78047175

Centisome position: 35.48

GC content: 62.59

Gene sequence:

>711_bases
ATGAACACACCCCAGGCAATGGTACCGGCGCGTCGTGGCAGCAGCATGCGCAAGCCCGAGATACAGGAGATGTTCGAGCG
CCTGCGCGAACTCAATCCGCACCCCACCACCGAGCTGGAATACACCACCCCATTCGAGTTATTGATCGCGGTGCTGCTGT
CGGCGCAAGCCACCGATGTCGGCGTCAACAAGGCGACCCGCAAGCTCTATCCGGTGGCCAACACCCCGCGCGACATTCTC
GATCTCGGCGAAGAAGGCCTGAAGCGGTACATCTCCACCATCGGCTTGTTCAACGCCAAGGCCAAGAACGTCATCGCCAC
CTGCCGCATCCTGCTGGAGCGCTATGGCGGCGACGTGCCGCATGATCGCGCCGCGCTGGAAGCGCTGCCCGGCGTGGGCC
GCAAGACCGCAAATGTGGTGCTCAACACCGCCTTCGGCGAACCCGCCATGGCCGTGGACACGCATATCTTTCGCGTTTCC
AACCGCACCGGCCTTGCACCAGGCAAGGACGTGCGCGCGGTCGAAGACAAGTTGGTCAAGGTGATCCCGGCCGAGTTTCT
ACACGATGCACATCACTGGCTGATCCTGCACGGACGCTACGTCTGCAAGGCACGCAAGCCGGATTGCCCGGGCTGCGTGA
TCCACGATCTATGCCGCTACCGCGACAAGACGCCACCGGCGCCTGAGCGGCAAGCAAAAACCAAGAGTTGA

Upstream 100 bases:

>100_bases
CCGCCCCGGCACCCAGCCAACCGGCAACGCCCGCACTGCCGCCGCTGGCCGCTGCCATCCTGGCGCGCGCGAAGGCGAAA
GCCGCTGGCGGAGCGCAGCC

Downstream 100 bases:

>100_bases
GACAGCAGTGGCGCCGGAGCAACGGCGCAACCGCGCGCCCTCGTCACACGCAGCAAACCGCAAGGCTGCAAGCTTTTACG
AATCTCGAATCCCCACTCCG

Product: putative endonuclease III

Products: NA

Alternate protein names: DNA-(apurinic or apyrimidinic site) lyase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNTPQAMVPARRGSSMRKPEIQEMFERLRELNPHPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVANTPRDIL
DLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGDVPHDRAALEALPGVGRKTANVVLNTAFGEPAMAVDTHIFRVS
NRTGLAPGKDVRAVEDKLVKVIPAEFLHDAHHWLILHGRYVCKARKPDCPGCVIHDLCRYRDKTPPAPERQAKTKS

Sequences:

>Translated_236_residues
MNTPQAMVPARRGSSMRKPEIQEMFERLRELNPHPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVANTPRDIL
DLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGDVPHDRAALEALPGVGRKTANVVLNTAFGEPAMAVDTHIFRVS
NRTGLAPGKDVRAVEDKLVKVIPAEFLHDAHHWLILHGRYVCKARKPDCPGCVIHDLCRYRDKTPPAPERQAKTKS
>Mature_236_residues
MNTPQAMVPARRGSSMRKPEIQEMFERLRELNPHPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVANTPRDIL
DLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGDVPHDRAALEALPGVGRKTANVVLNTAFGEPAMAVDTHIFRVS
NRTGLAPGKDVRAVEDKLVKVIPAEFLHDAHHWLILHGRYVCKARKPDCPGCVIHDLCRYRDKTPPAPERQAKTKS

Specific function: Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA dam

COG id: COG0177

COG function: function code L; Predicted EndoIII-related endonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

Organism=Homo sapiens, GI4505471, Length=178, Percent_Identity=32.0224719101124, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1787920, Length=208, Percent_Identity=72.1153846153846, Blast_Score=317, Evalue=5e-88,
Organism=Caenorhabditis elegans, GI17554540, Length=192, Percent_Identity=30.7291666666667, Blast_Score=97, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6324530, Length=192, Percent_Identity=24.4791666666667, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550361, Length=180, Percent_Identity=30.5555555555556, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR004036
- InterPro:   IPR005759
- InterPro:   IPR004035
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF10576 EndIII_4Fe-2S; PF00633 HHH; PF00730 HhH-GPD [H]

EC number: =4.2.99.18 [H]

Molecular weight: Translated: 26264; Mature: 26264

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS01155 ENDONUCLEASE_III_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPQAMVPARRGSSMRKPEIQEMFERLRELNPHPTTELEYTTPFELLIAVLLSAQATDV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
GVNKATRKLYPVANTPRDILDLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGDVP
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
HDRAALEALPGVGRKTANVVLNTAFGEPAMAVDTHIFRVSNRTGLAPGKDVRAVEDKLVK
CHHHHHHHCCCCCCCHHHEEEECCCCCCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
VIPAEFLHDAHHWLILHGRYVCKARKPDCPGCVIHDLCRYRDKTPPAPERQAKTKS
HHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTPQAMVPARRGSSMRKPEIQEMFERLRELNPHPTTELEYTTPFELLIAVLLSAQATDV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
GVNKATRKLYPVANTPRDILDLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGDVP
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
HDRAALEALPGVGRKTANVVLNTAFGEPAMAVDTHIFRVSNRTGLAPGKDVRAVEDKLVK
CHHHHHHHCCCCCCCHHHEEEECCCCCCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
VIPAEFLHDAHHWLILHGRYVCKARKPDCPGCVIHDLCRYRDKTPPAPERQAKTKS
HHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]