Click here to switch to the map view.

The map label for this gene is foxA [H]

Identifier: 78047048

GI number: 78047048

Start: 1679548

End: 1680441

Strand: Reverse

Name: foxA [H]

Synonym: XCV1492

Alternate gene names: 78047048

Gene position: 1680441-1679548 (Counterclockwise)

Preceding gene: 78047049

Following gene: 78047047

Centisome position: 32.45

GC content: 62.86

Gene sequence:

>894_bases
TTGGATGCCCTGCCCTGGCGCGCCACCAGCACGCGCAGTCAACGCTACGGTGCATATCTGCAGGACGAACTCACGCTGAC
GCCGCGCTGGTATGCAATGGCCGGGCTACGCTGGGACGGCTTCAAGGACGACGACCTGCTGACTGGTTCGCGCGTCACCG
GCAACGATCGCAGTTGGCGCGTCGGCAGCACCGTCGTGTTACGCGACGGCATCAATGCCTACGCAAGCTATGCCAGCGGC
TTCCTGCCGCAGGACGCGGCCAATCAGGACAGCAGCGTGGGCGGCCCGTTCGCACCGGAACGCAGCACCCAATGGGAAGT
GGGCCTGAAGACTGCGCTCAACGATGGCGGACTCACCCTCAACACGGCGCTGTATCGCATCGAGCGTAGCAACATCGTGC
AGGCGAACGGGCGCGTCGTCGACGGCGTCAATCAACTCTCCGCGCTTGGCTTGGTGCGTAGCGAAGGGCTGGAAGTCGAC
CTACTGGCCGACCTGACCGAACGCTGGGTGCTCAATCTCACTTATGCCTACAACGATGCACGCGTGCTCGATGCCGGCAC
CAACGGCATCACCAATGCCTCTGGCGATCGCTTCGCCAATGCACCGCGCAACACTTTTGGCTTGTGGACACGCTACGACC
TGCCCGCTTGGCGCTCGGCGATCGCCTTCGGTGCCGACTACGTGGGCGAACGCGTCAGCCTGGATGGGCAACGCGTCAAA
CCGTACGCCATCTACGACATCAGCTGGCAGACGCAATGGAACGCGTGGAAGCTGCAGATCAACATCAAGAACCTGTTCGA
CAAGGTGTATGCAGTGAGCGGTTTCAATACGCGCGCCGGGCACTTCCCCGGCGAGCCGCGTCGCCTTTACGCGCAGTTGG
CCTACAGCTTCTGA

Upstream 100 bases:

>100_bases
AACCGCCAACACCGCCGACACCGGACGCGTACGTGGCCCGGTGCCCGGCATCAATCTGTTCAACCCGGTGTACGGCCGCA
GCGGCTTCTACGACTAGGGC

Downstream 100 bases:

>100_bases
CCAGCGCGCAGCGGATCGGTGGCGCGCCGCCGGCCCGCTGCGACGGCAACGCAAACAGCACAGCGTGCCTGCGGCCGCCA
CGCGCTCAAGACACGTGTTT

Product: TonB-dependent outer membrane receptor (C-terminal fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDALPWRATSTRSQRYGAYLQDELTLTPRWYAMAGLRWDGFKDDDLLTGSRVTGNDRSWRVGSTVVLRDGINAYASYASG
FLPQDAANQDSSVGGPFAPERSTQWEVGLKTALNDGGLTLNTALYRIERSNIVQANGRVVDGVNQLSALGLVRSEGLEVD
LLADLTERWVLNLTYAYNDARVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPAWRSAIAFGADYVGERVSLDGQRVK
PYAIYDISWQTQWNAWKLQINIKNLFDKVYAVSGFNTRAGHFPGEPRRLYAQLAYSF

Sequences:

>Translated_297_residues
MDALPWRATSTRSQRYGAYLQDELTLTPRWYAMAGLRWDGFKDDDLLTGSRVTGNDRSWRVGSTVVLRDGINAYASYASG
FLPQDAANQDSSVGGPFAPERSTQWEVGLKTALNDGGLTLNTALYRIERSNIVQANGRVVDGVNQLSALGLVRSEGLEVD
LLADLTERWVLNLTYAYNDARVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPAWRSAIAFGADYVGERVSLDGQRVK
PYAIYDISWQTQWNAWKLQINIKNLFDKVYAVSGFNTRAGHFPGEPRRLYAQLAYSF
>Mature_297_residues
MDALPWRATSTRSQRYGAYLQDELTLTPRWYAMAGLRWDGFKDDDLLTGSRVTGNDRSWRVGSTVVLRDGINAYASYASG
FLPQDAANQDSSVGGPFAPERSTQWEVGLKTALNDGGLTLNTALYRIERSNIVQANGRVVDGVNQLSALGLVRSEGLEVD
LLADLTERWVLNLTYAYNDARVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPAWRSAIAFGADYVGERVSLDGQRVK
PYAIYDISWQTQWNAWKLQINIKNLFDKVYAVSGFNTRAGHFPGEPRRLYAQLAYSF

Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=312, Percent_Identity=25.3205128205128, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787344, Length=293, Percent_Identity=28.6689419795222, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787024, Length=252, Percent_Identity=26.5873015873016, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 33116; Mature: 33116

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALPWRATSTRSQRYGAYLQDELTLTPRWYAMAGLRWDGFKDDDLLTGSRVTGNDRSWR
CCCCCCCCCCCCCHHCCCEEECCEEECCCCEEEECCEECCCCCCCCCCCCEECCCCCCEE
VGSTVVLRDGINAYASYASGFLPQDAANQDSSVGGPFAPERSTQWEVGLKTALNDGGLTL
ECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEE
NTALYRIERSNIVQANGRVVDGVNQLSALGLVRSEGLEVDLLADLTERWVLNLTYAYNDA
EHEEEEEECCCEEEECCEEECCHHHHHHHHHHHHCCCCEEHHHHCCCCEEEEEEEEECCC
RVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPAWRSAIAFGADYVGERVSLDGQRVK
EEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCHHHCCCEECCCCCCCC
PYAIYDISWQTQWNAWKLQINIKNLFDKVYAVSGFNTRAGHFPGEPRRLYAQLAYSF
CEEEEEEEEEECCCEEEEEEEHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDALPWRATSTRSQRYGAYLQDELTLTPRWYAMAGLRWDGFKDDDLLTGSRVTGNDRSWR
CCCCCCCCCCCCCHHCCCEEECCEEECCCCEEEECCEECCCCCCCCCCCCEECCCCCCEE
VGSTVVLRDGINAYASYASGFLPQDAANQDSSVGGPFAPERSTQWEVGLKTALNDGGLTL
ECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEE
NTALYRIERSNIVQANGRVVDGVNQLSALGLVRSEGLEVDLLADLTERWVLNLTYAYNDA
EHEEEEEECCCEEEECCEEECCHHHHHHHHHHHHCCCCEEHHHHCCCCEEEEEEEEECCC
RVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPAWRSAIAFGADYVGERVSLDGQRVK
EEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCHHHCCCEECCCCCCCC
PYAIYDISWQTQWNAWKLQINIKNLFDKVYAVSGFNTRAGHFPGEPRRLYAQLAYSF
CEEEEEEEEEECCCEEEEEEEHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 10103258; 7642488 [H]