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The map label for this gene is ydcO [H]

Identifier: 78045222

GI number: 78045222

Start: 1130807

End: 1132060

Strand: Direct

Name: ydcO [H]

Synonym: CHY_1271

Alternate gene names: 78045222

Gene position: 1130807-1132060 (Clockwise)

Preceding gene: 78044488

Following gene: 78042657

Centisome position: 47.09

GC content: 39.47

Gene sequence:

>1254_bases
ATGAGTATTTCTAATAACTTAATGGAGAAAGGTTATAATATTGGCGAAAGCTTTAAAGAACTCGTTAAAAATCTTTCTTT
TCCCGGCTTAACTACTGGATTAATCGGTGCGTTATTTAGTAGCATGGGGCCGGGCTTGATTGTGATGAGCGCGGCCAAGC
AAGGTAACCTTCCTGATGATATTGCAGTGTCCTGGATTTTTGCGATCTTTTTCTTTGCTGGGTTAGCGACGATGTTTGTT
TCACTTTACTATCGCGTTCCCCTCGTGATAGCTTACAGTATACCAGGTTCAGTTCTAATTGGCAAGTACTTGGCATCTGG
TGGGAATATACACGAAGCGGTCGGTGTTTATTTTAGCATAGCTGTGCTTGTTATTATCCTTACGGCTACAGGTGCTATTA
AAGCTGTTATCGAACATATTCCGATTCCTATAATGCTGGGGATGGTTGGCGGAGTACTTTTGAGCTTTGGATTAAATGCT
TTTACAAGTGCTTTGACCACGCCTGCAGTTTATGGCATAATGGTAATTATTTATTTTATATGGTACTATTTTAAAGGGTT
ATCAAGTAAGATACCTGGAGTTGTGGTATCACTGATTGTTGGTGTACTATTGCTGAAATACTTTGGATTAACCAAGAATG
TTCCTATACAATGGGAAGTTGCAAAGCCTGTAATTGTTTCTCCTAGTTTTAGTTTAAAAGGTTTACTCACCTTGGGAGTT
CCACTGTTCTTTATGGTAGTTGGTGTCCAAAACATCCAAGCAGTTGGGGTATTATTATCCAGGGGATATAAGCCACCAAT
AAATGCAATGTATTTTATTCCCTCGATTGCTACATTTTTTAATGGTTTGTTTGCTGGTCACACTGCAGTAACGGCAGGAC
CAAGTACAGCTATTTGTTCTAGTGATATTGCAGGGCCCAAAGAGTACCGCTGGATTGCTTCTTTCTTTGAAGGAGTTTTT
TGGGTATTGGTGGGCTTATTAGCGAAAGTTGGGGTTGAAAGTGCGAAGTTGGCTCCCAAGGAATTTATGCAAGTCATTGC
TGGCTTAGCTATGTTTGAAGTATTTATAAGTGTTTTTGAAGGGGCATTTAGTCAAAAGTTTCGCAAGGGAGCGATGGTAG
CATTCTTTGTGGCTGCCAGCGGTATTTCTTTATTTAATATTGGCGCTCCTTTCTGGGCAATTGTATTTGGCGTCATAGCT
TCACTGATAGCTGAAAATGGTGATTTTAAAAAAATAAATAATGAACAGCAATAA

Upstream 100 bases:

>100_bases
AAAAGAAAGAAAAAAAGAAGAAAAAAAGAAGAAGAAAAAATGAACTAGATATGGAATTTTTGTAGGGAAAAAAATTAGAT
TAATATGAAGGAGGGTAAAG

Downstream 100 bases:

>100_bases
AACTTTTGCTAAAAATTGATAAATTGAAATTAAGCACCTTCTATGGGGGTGTTTTGGCAACACCCCCACCCCTTTTTTGC
AAACTTAAGAATTGAAAGAA

Product: putative benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSISNNLMEKGYNIGESFKELVKNLSFPGLTTGLIGALFSSMGPGLIVMSAAKQGNLPDDIAVSWIFAIFFFAGLATMFV
SLYYRVPLVIAYSIPGSVLIGKYLASGGNIHEAVGVYFSIAVLVIILTATGAIKAVIEHIPIPIMLGMVGGVLLSFGLNA
FTSALTTPAVYGIMVIIYFIWYYFKGLSSKIPGVVVSLIVGVLLLKYFGLTKNVPIQWEVAKPVIVSPSFSLKGLLTLGV
PLFFMVVGVQNIQAVGVLLSRGYKPPINAMYFIPSIATFFNGLFAGHTAVTAGPSTAICSSDIAGPKEYRWIASFFEGVF
WVLVGLLAKVGVESAKLAPKEFMQVIAGLAMFEVFISVFEGAFSQKFRKGAMVAFFVAASGISLFNIGAPFWAIVFGVIA
SLIAENGDFKKINNEQQ

Sequences:

>Translated_417_residues
MSISNNLMEKGYNIGESFKELVKNLSFPGLTTGLIGALFSSMGPGLIVMSAAKQGNLPDDIAVSWIFAIFFFAGLATMFV
SLYYRVPLVIAYSIPGSVLIGKYLASGGNIHEAVGVYFSIAVLVIILTATGAIKAVIEHIPIPIMLGMVGGVLLSFGLNA
FTSALTTPAVYGIMVIIYFIWYYFKGLSSKIPGVVVSLIVGVLLLKYFGLTKNVPIQWEVAKPVIVSPSFSLKGLLTLGV
PLFFMVVGVQNIQAVGVLLSRGYKPPINAMYFIPSIATFFNGLFAGHTAVTAGPSTAICSSDIAGPKEYRWIASFFEGVF
WVLVGLLAKVGVESAKLAPKEFMQVIAGLAMFEVFISVFEGAFSQKFRKGAMVAFFVAASGISLFNIGAPFWAIVFGVIA
SLIAENGDFKKINNEQQ
>Mature_416_residues
SISNNLMEKGYNIGESFKELVKNLSFPGLTTGLIGALFSSMGPGLIVMSAAKQGNLPDDIAVSWIFAIFFFAGLATMFVS
LYYRVPLVIAYSIPGSVLIGKYLASGGNIHEAVGVYFSIAVLVIILTATGAIKAVIEHIPIPIMLGMVGGVLLSFGLNAF
TSALTTPAVYGIMVIIYFIWYYFKGLSSKIPGVVVSLIVGVLLLKYFGLTKNVPIQWEVAKPVIVSPSFSLKGLLTLGVP
LFFMVVGVQNIQAVGVLLSRGYKPPINAMYFIPSIATFFNGLFAGHTAVTAGPSTAICSSDIAGPKEYRWIASFFEGVFW
VLVGLLAKVGVESAKLAPKEFMQVIAGLAMFEVFISVFEGAFSQKFRKGAMVAFFVAASGISLFNIGAPFWAIVFGVIAS
LIAENGDFKKINNEQQ

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=388, Percent_Identity=27.319587628866, Blast_Score=151, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 44613; Mature: 44481

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISNNLMEKGYNIGESFKELVKNLSFPGLTTGLIGALFSSMGPGLIVMSAAKQGNLPDD
CCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
IAVSWIFAIFFFAGLATMFVSLYYRVPLVIAYSIPGSVLIGKYLASGGNIHEAVGVYFSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
AVLVIILTATGAIKAVIEHIPIPIMLGMVGGVLLSFGLNAFTSALTTPAVYGIMVIIYFI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYYFKGLSSKIPGVVVSLIVGVLLLKYFGLTKNVPIQWEVAKPVIVSPSFSLKGLLTLGV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCHHHHHHHHH
PLFFMVVGVQNIQAVGVLLSRGYKPPINAMYFIPSIATFFNGLFAGHTAVTAGPSTAICS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
SDIAGPKEYRWIASFFEGVFWVLVGLLAKVGVESAKLAPKEFMQVIAGLAMFEVFISVFE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
GAFSQKFRKGAMVAFFVAASGISLFNIGAPFWAIVFGVIASLIAENGDFKKINNEQQ
HHHHHHHHHCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SISNNLMEKGYNIGESFKELVKNLSFPGLTTGLIGALFSSMGPGLIVMSAAKQGNLPDD
CCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
IAVSWIFAIFFFAGLATMFVSLYYRVPLVIAYSIPGSVLIGKYLASGGNIHEAVGVYFSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
AVLVIILTATGAIKAVIEHIPIPIMLGMVGGVLLSFGLNAFTSALTTPAVYGIMVIIYFI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYYFKGLSSKIPGVVVSLIVGVLLLKYFGLTKNVPIQWEVAKPVIVSPSFSLKGLLTLGV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCHHHHHHHHH
PLFFMVVGVQNIQAVGVLLSRGYKPPINAMYFIPSIATFFNGLFAGHTAVTAGPSTAICS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
SDIAGPKEYRWIASFFEGVFWVLVGLLAKVGVESAKLAPKEFMQVIAGLAMFEVFISVFE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
GAFSQKFRKGAMVAFFVAASGISLFNIGAPFWAIVFGVIASLIAENGDFKKINNEQQ
HHHHHHHHHCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]