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The map label for this gene is arnC [H]

Identifier: 78044615

GI number: 78044615

Start: 928042

End: 928728

Strand: Direct

Name: arnC [H]

Synonym: CHY_1050

Alternate gene names: 78044615

Gene position: 928042-928728 (Clockwise)

Preceding gene: 78044201

Following gene: 78042665

Centisome position: 38.64

GC content: 33.77

Gene sequence:

>687_bases
TTGAAATTATCAGTCATTATTCCTTGTTATAACGAAAGGGCCACCATAAGGGAAATAATTAAAAGAGTTCAGGAAGTCCC
AGTTAAAAAAGAAATAATTGTTGTAGATGATGGATCTACGGACGGTACTCGAGAAATATTACAGGAAATTAAAAACGAGT
TTGATAATATACAAGTTATTTTACAACCACAAAACTATGGTAAGGGCTATGCTTTTAGAACCGGATTAAATGTAGCTTCT
GGCGAGGTTGTAATTATCCAGGATGCGGATTTAGAATATGATCCTAATGATTACTTAAAGATTTTAGAGCTTTTTAAAAA
CCCTGAAGTAAAAGTTGTGTATGGATCACGTATCTTAAATCCCGCAAATGAAAAATCGTATTTAAGTTTTTATTTGGGTG
GACGGTTGGTAACTTTTATTACCAATATTCTTTTTGGCAGTAATTTAACTGATGAACCTACCTGTTATAAAGCTTTTCGC
CTGGATTTTATTAAAAGTGTTCCGATGGTAGGTACGGGTTTTGAATTAGAGCCTGAAATTACCGCAAAAATTTTAAAGCG
GGGTGTAAAAATTTACGAGGTACCAATAAGTTATTTTCCCAGAAAAGCCGAAGAAGGTAAGAAGATAAAATGGAAGGATG
GGCTTTTAGCAATATGGACGCTTCTAAAGTACAGGATAAAAGATTAG

Upstream 100 bases:

>100_bases
AATTTAAAAATTACTTTGCCAAAAATAATCCTAAAATTGTCTACTTGCAAAATGGATATGTTGCCGGAATTGTAAAAATA
AGATAACAGGAGGAGCGGCA

Downstream 100 bases:

>100_bases
CAAGGAGAATGGAGATGACAAAGTATATCTTGTTGCTGTTGGCAATTACTTTTATTAATGTTATTGGACAGTTTTTCATT
AAAAAAGGTGTAAGTGGGCA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKLSVIIPCYNERATIREIIKRVQEVPVKKEIIVVDDGSTDGTREILQEIKNEFDNIQVILQPQNYGKGYAFRTGLNVAS
GEVVIIQDADLEYDPNDYLKILELFKNPEVKVVYGSRILNPANEKSYLSFYLGGRLVTFITNILFGSNLTDEPTCYKAFR
LDFIKSVPMVGTGFELEPEITAKILKRGVKIYEVPISYFPRKAEEGKKIKWKDGLLAIWTLLKYRIKD

Sequences:

>Translated_228_residues
MKLSVIIPCYNERATIREIIKRVQEVPVKKEIIVVDDGSTDGTREILQEIKNEFDNIQVILQPQNYGKGYAFRTGLNVAS
GEVVIIQDADLEYDPNDYLKILELFKNPEVKVVYGSRILNPANEKSYLSFYLGGRLVTFITNILFGSNLTDEPTCYKAFR
LDFIKSVPMVGTGFELEPEITAKILKRGVKIYEVPISYFPRKAEEGKKIKWKDGLLAIWTLLKYRIKD
>Mature_228_residues
MKLSVIIPCYNERATIREIIKRVQEVPVKKEIIVVDDGSTDGTREILQEIKNEFDNIQVILQPQNYGKGYAFRTGLNVAS
GEVVIIQDADLEYDPNDYLKILELFKNPEVKVVYGSRILNPANEKSYLSFYLGGRLVTFITNILFGSNLTDEPTCYKAFR
LDFIKSVPMVGTGFELEPEITAKILKRGVKIYEVPISYFPRKAEEGKKIKWKDGLLAIWTLLKYRIKD

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=215, Percent_Identity=28.3720930232558, Blast_Score=88, Evalue=6e-18,
Organism=Escherichia coli, GI1787259, Length=117, Percent_Identity=35.8974358974359, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788588, Length=213, Percent_Identity=24.8826291079812, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786560, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71999402, Length=213, Percent_Identity=27.2300469483568, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24585265, Length=209, Percent_Identity=25.8373205741627, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26135; Mature: 26135

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSVIIPCYNERATIREIIKRVQEVPVKKEIIVVDDGSTDGTREILQEIKNEFDNIQVI
CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
LQPQNYGKGYAFRTGLNVASGEVVIIQDADLEYDPNDYLKILELFKNPEVKVVYGSRILN
EECCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCEECC
PANEKSYLSFYLGGRLVTFITNILFGSNLTDEPTCYKAFRLDFIKSVPMVGTGFELEPEI
CCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHH
TAKILKRGVKIYEVPISYFPRKAEEGKKIKWKDGLLAIWTLLKYRIKD
HHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLSVIIPCYNERATIREIIKRVQEVPVKKEIIVVDDGSTDGTREILQEIKNEFDNIQVI
CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
LQPQNYGKGYAFRTGLNVASGEVVIIQDADLEYDPNDYLKILELFKNPEVKVVYGSRILN
EECCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCEECC
PANEKSYLSFYLGGRLVTFITNILFGSNLTDEPTCYKAFRLDFIKSVPMVGTGFELEPEI
CCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHH
TAKILKRGVKIYEVPISYFPRKAEEGKKIKWKDGLLAIWTLLKYRIKD
HHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA