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The map label for this gene is stc [H]

Identifier: 78042973

GI number: 78042973

Start: 1116505

End: 1118397

Strand: Direct

Name: stc [H]

Synonym: CHY_1254

Alternate gene names: 78042973

Gene position: 1116505-1118397 (Clockwise)

Preceding gene: 78044232

Following gene: 78042792

Centisome position: 46.49

GC content: 35.5

Gene sequence:

>1893_bases
ATGGAAATAACAGTGAATATTGTGCTCATTGCTCCTTATAAAAATCTGCTTGAAATAGCTATTGAGGTCAAAAAGGATTT
TGATTTTGCTTTTAATTTGGAACTTGGAGATCTAAGTGAAGGCGTGAAAATAGCACAGGAGTGGGAAAAGAAAGGAGCCG
ACATCATTATTAGCCGTGGTGGTACTTACCAACTTATAAAAGAAGCAGTATCGATACCTGTAGTTGAAATAAAAGTTAGC
CCCTTCGATATTCTCAGGCAGTTTAAAGGACTGATTGGTTATAGCGAACCTATTGGAGTCGCTGGTTATATGAATGTAAT
TTACGGTTCTGAAGTTATCGGGGAAGTATTGAATTTAAACCTTATTAAAATAGAAATCAAAAAGGAAACAGAAGCTCTAT
TTCAAATTGCTGAAGCCAAGGAAAAAGGCGCAAAGATAATCATCGGTGACACCATTGGTGCTTGTTGCGCTGCACAACTA
GGGCTTAAAAGTCGGCTAATTATTTCTGGTAAAGAAGCGGTTGCAAATGCGCTTAGTGAAGCATTCAGGCTAGCGGAAGC
CATTAAATCAGAAAAAGAAAAAACCGAACAGATTAAAACAATTGTTGACTTTGTACATGACGGGATTATTGCCGTGGATA
AAGATGGGAGGATATCTATATATAATAAAATGGCGGAAAAAATATTCAAAAAACTACCTTCCGAAGTTATAGGAAAAAAA
GTAGAAACAGTAATACCTAATACCCGATTATACGAGGTGATAAAGACAGGAAAGCCTGAAATCGGAAAAATACAGGAAAT
TTCGGGAACTATGATTGCCACAAACCGAGTTCCAATTGTGGTAGGTAATGAGGTTGTAGGAGCAGTTGCAACATTTCAGG
ATGTGGCTGAAATTCAAAATATGGAACAAAAAATAAGAAGACGGCTGGCAGATAAAGGATTGATTGCGTCTTTTAAGTTT
GATGACATTATTTTTATAAGTGATAAAATGAAAGATGTTGTTAATCAAGCAAAAAAATATGCTCTTTTAGATTCTACAGT
CCTTATTTTGGGCGAAACGGGTACGGGCAAGGAACTTTTTGCCCAAAGTATTCACAATGCAAGTGAAAGAAAAAATGGTC
CATTTGTAGCAATAAATTGTGCTGCTTTGCCAGAAAATTTATTAGAGAGCGAATTGTTCGGATATGCTGAAGGAGCTTTT
ACTGGCGCAAGAAAAGGAGGAAAGGCAGGGCTATTCGAGCTTGCTCATAAAGGTACCATATTTTTAGACGAAATCGGTGA
AATGCCTATGGGGCTCCAGTCAAAACTGCTAAGAGTAATCCAAGAAAAAAAGGTGATGAGAATAGGAGATGATAGGTTAA
TCCCGGTTGATGTGAGAATAATATGTGCCACAAATCGAAATCTTATTGAAATGATTAATGAAGGTAAGTTTAAACGAGAC
TTATTTTACCGGATTAGCATTCTTCAAATCCATATACCGTCTCTCAGGGAAAGAAAAGAGGACATTGAAGTACTTGTACC
ATACTTTATAAAAAAATATTCACTTATTTGCAAAAAGCATATTCAAGGAATCACTTCCAGGGGGATGGAGCTTTTAAAGA
AATGGGATTATCCAGGAAATGTAAGGGAATTGGAGAGCATTATCGAAAGAGCCTGCGCTATTTGCGAAGGTAATATTATC
GATGTAAGGGATATTAAACTATACAATGATCAAGATAGTATGGAAAATAAAGTGTCAAGTCAATCCTTCCTTGAAATAAA
ACCATTAGACGAAATTGAAAAAGAATATATTAAAAAGGTTATAAAATTTACAGATGGAAATTTATCAGAAGCAGCGAAAA
AGCTTGGAATAAGTAGAACAACTTTATGGAGAAAATTAAAAAATTTCAATTAA

Upstream 100 bases:

>100_bases
CGCTGTAAGTACATTAAATGTTGATGCCTCGAATAGGTTAAAATTTTTTTCGCGATAAAATTCCTAAAGGGCGGGAGTGG
CACAATCCTTTTTTGAAAGG

Downstream 100 bases:

>100_bases
ATTCATTACCGGAAACCATTGTTGCATTTTGCAACAATGGTTTTATTTTTTAACGAATAAGTGTTTCAAATTTTAACATT
TGTATTAAAGTATTTAGCAA

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEKKGADIIISRGGTYQLIKEAVSIPVVEIKVS
PFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIKIEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQL
GLKSRLIISGKEAVANALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKK
VETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQNMEQKIRRRLADKGLIASFKF
DDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAF
TGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRD
LFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIERACAICEGNII
DVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN

Sequences:

>Translated_630_residues
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEKKGADIIISRGGTYQLIKEAVSIPVVEIKVS
PFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIKIEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQL
GLKSRLIISGKEAVANALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKK
VETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQNMEQKIRRRLADKGLIASFKF
DDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAF
TGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRD
LFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIERACAICEGNII
DVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN
>Mature_630_residues
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEKKGADIIISRGGTYQLIKEAVSIPVVEIKVS
PFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIKIEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQL
GLKSRLIISGKEAVANALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKK
VETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQNMEQKIRRRLADKGLIASFKF
DDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAF
TGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRD
LFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIERACAICEGNII
DVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN

Specific function: Required For Induction Of Expression Of The Hydrogenase- 4 Structural Genes. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=365, Percent_Identity=41.6438356164384, Blast_Score=283, Evalue=3e-77,
Organism=Escherichia coli, GI1788550, Length=346, Percent_Identity=43.0635838150289, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1790437, Length=301, Percent_Identity=44.8504983388704, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1789233, Length=455, Percent_Identity=36.043956043956, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI1786524, Length=353, Percent_Identity=41.3597733711048, Blast_Score=258, Evalue=5e-70,
Organism=Escherichia coli, GI1789087, Length=366, Percent_Identity=41.5300546448087, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1788905, Length=395, Percent_Identity=36.9620253164557, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI1787583, Length=318, Percent_Identity=38.3647798742138, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI87082152, Length=236, Percent_Identity=46.6101694915254, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1790299, Length=331, Percent_Identity=37.4622356495468, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081872, Length=316, Percent_Identity=39.873417721519, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI87081858, Length=445, Percent_Identity=28.314606741573, Blast_Score=178, Evalue=7e-46,
Organism=Escherichia coli, GI1789828, Length=291, Percent_Identity=32.6460481099656, Blast_Score=142, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 70462; Mature: 70462

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEKKGADIIISRG
CEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECC
GTYQLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLN
CHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCE
LIKIEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQLGLKSRLIISGKEAVANALSE
EEEEEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHH
AFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCH
VETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQN
HHHHCCCHHHHHHHHCCCCCCCCHHHCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHH
MEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELF
HHHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
AQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTI
HHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCE
FLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRD
EEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHCCCHHHH
LFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGN
HHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKV
HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHCCCCCEEEECCHHHHHHHHHHHH
IKFTDGNLSEAAKKLGISRTTLWRKLKNFN
HHHCCCCHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEKKGADIIISRG
CEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECC
GTYQLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLN
CHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCE
LIKIEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQLGLKSRLIISGKEAVANALSE
EEEEEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHH
AFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCH
VETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQN
HHHHCCCHHHHHHHHCCCCCCCCHHHCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHH
MEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELF
HHHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
AQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTI
HHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCE
FLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRD
EEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHCCCHHHH
LFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGN
HHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKV
HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHCCCCCEEEECCHHHHHHHHHHHH
IKFTDGNLSEAAKKLGISRTTLWRKLKNFN
HHHCCCCHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA