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The map label for this gene is yliC [C]

Identifier: 77465523

GI number: 77465523

Start: 602038

End: 603003

Strand: Reverse

Name: yliC [C]

Synonym: RSP_3523

Alternate gene names: 77465523

Gene position: 603003-602038 (Counterclockwise)

Preceding gene: 77465524

Following gene: 77465522

Centisome position: 63.94

GC content: 65.42

Gene sequence:

>966_bases
ATGAACAGAACTTCCCATCCGATCTTGTCCATGGTGGCCAGTCGGGTCGGTCTGGGGCTTCTCAGCCTCCTTATCGTGTC
TCTGGTGATCTTCTTCTCGGTGAGCCTGCTGCCGGGCAGCTATGCCTCGGCCATCCTCGGGCAGAATGCGACGCCCGAGG
CGGTGGCGGCTCTCGAGACCCGGCTCGGGCTCGATCAACCGGCGATCTGGCGCTACCTTTCGTGGCTCGGCGCGGCGGCG
ACGGGCGATCTCGGCCAGTCCTTCGCCGGTCGGCCGGTCATGGCGGTGCTGGGGCCGCGGCTCCTCAACACGATCACGCT
GGCCTCGATCACGGCCGTGATCGCGGTGCCGCTCGCGATCACCCTCGGTGTGATCTGCGCGCGCTTCCGCGGCCGGTTCA
TCGACCGCTTCCTGTCGACCTCGACGCTCGCCTCGATCTCGCTGCCGGAATTCTTCGTGGCCTATCTGATGATGATGATC
TTCGCGGTGAAGCTGCAATGGTTCCCCTCGATGGCGGGGATCCGCAACAGCATGGATCTGGGCGAGCAGCTCTACCGCAT
GGTGCTGCCGATCCTGACGCTGCTCCTCGTCATTCTCGCGCACATGATCCGCAACACGCGCGCGGCGATCCTGTCGGTGA
TGTCGAGCCCCTATGTCGAGATGGCGCGGCTGAAGGGCGAATCCGAGGGCCGCGTGGTCACGCGTCAGGCGCTGCCCAAT
GCCATCGGCCCCATCGCGAGCGTGGTGGCGCTGAACCTCGCCTATCTCATCTCCGGCGTCGTCGTGATCGAGGTGGTCTT
CGTTTATCCGGGCGTCGGTCAGGCGATGATCGACGCGGTGCGCAACCGCGACGTGCCGGTGATCCAGGCCTGCGCGCTGA
TCTTCGCCACGGCCTACATCGGCTTCAACCTGCTGGCCGATATCGTCTCGATCGTCAGCAACCCGCGCCTGCTGCATCCG
CGCTGA

Upstream 100 bases:

>100_bases
GCTGCGCCGAGCGGTGGTGGCGCACCGACGTCTGACACAACGGGGTGGGCGGACCTGCCTGACCGCCCTTTCACCCGAGC
CTTGCCGGAGACAGCCGAGT

Downstream 100 bases:

>100_bases
GAGGGGTATCATGGACCAGAGCATCGACGCCCGCCCCGCCACGCCGTCGCGCCTGACCCGCGCCCGCAGGCTTCTCACCA
CCGCGCCCTTCACCGCACGG

Product: ABC peptide transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNRTSHPILSMVASRVGLGLLSLLIVSLVIFFSVSLLPGSYASAILGQNATPEAVAALETRLGLDQPAIWRYLSWLGAAA
TGDLGQSFAGRPVMAVLGPRLLNTITLASITAVIAVPLAITLGVICARFRGRFIDRFLSTSTLASISLPEFFVAYLMMMI
FAVKLQWFPSMAGIRNSMDLGEQLYRMVLPILTLLLVILAHMIRNTRAAILSVMSSPYVEMARLKGESEGRVVTRQALPN
AIGPIASVVALNLAYLISGVVVIEVVFVYPGVGQAMIDAVRNRDVPVIQACALIFATAYIGFNLLADIVSIVSNPRLLHP
R

Sequences:

>Translated_321_residues
MNRTSHPILSMVASRVGLGLLSLLIVSLVIFFSVSLLPGSYASAILGQNATPEAVAALETRLGLDQPAIWRYLSWLGAAA
TGDLGQSFAGRPVMAVLGPRLLNTITLASITAVIAVPLAITLGVICARFRGRFIDRFLSTSTLASISLPEFFVAYLMMMI
FAVKLQWFPSMAGIRNSMDLGEQLYRMVLPILTLLLVILAHMIRNTRAAILSVMSSPYVEMARLKGESEGRVVTRQALPN
AIGPIASVVALNLAYLISGVVVIEVVFVYPGVGQAMIDAVRNRDVPVIQACALIFATAYIGFNLLADIVSIVSNPRLLHP
R
>Mature_321_residues
MNRTSHPILSMVASRVGLGLLSLLIVSLVIFFSVSLLPGSYASAILGQNATPEAVAALETRLGLDQPAIWRYLSWLGAAA
TGDLGQSFAGRPVMAVLGPRLLNTITLASITAVIAVPLAITLGVICARFRGRFIDRFLSTSTLASISLPEFFVAYLMMMI
FAVKLQWFPSMAGIRNSMDLGEQLYRMVLPILTLLLVILAHMIRNTRAAILSVMSSPYVEMARLKGESEGRVVTRQALPN
AIGPIASVVALNLAYLISGVVVIEVVFVYPGVGQAMIDAVRNRDVPVIQACALIFATAYIGFNLLADIVSIVSNPRLLHP
R

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=35.4838709677419, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=31.6715542521994, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789888, Length=299, Percent_Identity=34.4481605351171, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787497, Length=298, Percent_Identity=29.8657718120805, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787761, Length=295, Percent_Identity=29.4915254237288, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=24.1007194244604, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=26.9503546099291, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34535; Mature: 34535

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTSHPILSMVASRVGLGLLSLLIVSLVIFFSVSLLPGSYASAILGQNATPEAVAALET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
RLGLDQPAIWRYLSWLGAAATGDLGQSFAGRPVMAVLGPRLLNTITLASITAVIAVPLAI
HHCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGVICARFRGRFIDRFLSTSTLASISLPEFFVAYLMMMIFAVKLQWFPSMAGIRNSMDL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEQLYRMVLPILTLLLVILAHMIRNTRAAILSVMSSPYVEMARLKGESEGRVVTRQALPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEHHHCCH
AIGPIASVVALNLAYLISGVVVIEVVFVYPGVGQAMIDAVRNRDVPVIQACALIFATAYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
GFNLLADIVSIVSNPRLLHPR
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNRTSHPILSMVASRVGLGLLSLLIVSLVIFFSVSLLPGSYASAILGQNATPEAVAALET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
RLGLDQPAIWRYLSWLGAAATGDLGQSFAGRPVMAVLGPRLLNTITLASITAVIAVPLAI
HHCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGVICARFRGRFIDRFLSTSTLASISLPEFFVAYLMMMIFAVKLQWFPSMAGIRNSMDL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEQLYRMVLPILTLLLVILAHMIRNTRAAILSVMSSPYVEMARLKGESEGRVVTRQALPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEHHHCCH
AIGPIASVVALNLAYLISGVVVIEVVFVYPGVGQAMIDAVRNRDVPVIQACALIFATAYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
GFNLLADIVSIVSNPRLLHPR
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]