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The map label for this gene is yohK [H]

Identifier: 77465334

GI number: 77465334

Start: 396882

End: 397598

Strand: Reverse

Name: yohK [H]

Synonym: RSP_3332

Alternate gene names: 77465334

Gene position: 397598-396882 (Counterclockwise)

Preceding gene: 77465335

Following gene: 77465333

Centisome position: 42.16

GC content: 73.36

Gene sequence:

>717_bases
ATGCGTGACGTCACCGAGATCTGGAGCTATCTGGCCCACGGCCCGCTCCTCTGGCTCGCCCTGACCCTCGCGGCCTTCGT
TGCGGGCAGTTTCCTCTTCGAGCGGGCGGGCCGCCGGGCCTGGGCCAATCCGGTGCTGATCGCGGTGGCGCTGGTGGCGG
CGGCGCTGGAACTCACCGGCACCAGCTACGCCACCTATTTCGAGGGCGCGCAGTTCGTGCATTTCATGCTGGGGCCGGTG
ACGGTGGCGCTGGCCACGCCTCTCTGGGACAATCGCGCCGCGGTGCGCCGGTCGCTCCTGCCGATGGCGGCGGCGCTTGC
GGCGGGTCTCACCGCGGCGCTCGGCAGCGTCGTGCTGATCGGCCGGGCCATGGGCCTGCCCGCGGGCACCATCCTGTCGA
TGCTGCCCAAGTCGGCCACCGCGCCGGTGGCCATCGGCGTCTCGGAAGGGATCGGCGGCTCGCCCACCCTGACGGCGGTG
CTCGTGATCCTGACCGGCATCGTGGGCGCGGTGCTGGCGCCGCCGCTGCTGGCGCTCCTGCGCATCCGCGACCCGCGGGC
CCGCGGCTTCGCTGTGGGCCTTGCCGCCCACGGGATCGGCACGGCGCAGATGATGCTGACGGACGCGCGGGCGGGGGCCT
TCGCCGGGATCGGACTCGGCGTCGGAGCGGTGACCACAGCCCTCGTGGCGCCCCTCGTGGCCCACTGGCTGTTCTGA

Upstream 100 bases:

>100_bases
GCGGTGCCGCTTCTGGTGACGCTGGTCGCGAGCACGGTTCTCGCGCTTCTGGCCGCGGCCGTGGCCTTCGCCGCCGTGGC
CCGGCTGACGGGGCCGCGCG

Downstream 100 bases:

>100_bases
TCGGAGCCAGGGCCGCGTCCCGCGCGTTGTCACCCGACACCATCAGAGGGAGACGCCCATGCACCGCGAGACCCTGAAGC
TCCTCATGGCGGGGTGGAGC

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRDVTEIWSYLAHGPLLWLALTLAAFVAGSFLFERAGRRAWANPVLIAVALVAAALELTGTSYATYFEGAQFVHFMLGPV
TVALATPLWDNRAAVRRSLLPMAAALAAGLTAALGSVVLIGRAMGLPAGTILSMLPKSATAPVAIGVSEGIGGSPTLTAV
LVILTGIVGAVLAPPLLALLRIRDPRARGFAVGLAAHGIGTAQMMLTDARAGAFAGIGLGVGAVTTALVAPLVAHWLF

Sequences:

>Translated_238_residues
MRDVTEIWSYLAHGPLLWLALTLAAFVAGSFLFERAGRRAWANPVLIAVALVAAALELTGTSYATYFEGAQFVHFMLGPV
TVALATPLWDNRAAVRRSLLPMAAALAAGLTAALGSVVLIGRAMGLPAGTILSMLPKSATAPVAIGVSEGIGGSPTLTAV
LVILTGIVGAVLAPPLLALLRIRDPRARGFAVGLAAHGIGTAQMMLTDARAGAFAGIGLGVGAVTTALVAPLVAHWLF
>Mature_238_residues
MRDVTEIWSYLAHGPLLWLALTLAAFVAGSFLFERAGRRAWANPVLIAVALVAAALELTGTSYATYFEGAQFVHFMLGPV
TVALATPLWDNRAAVRRSLLPMAAALAAGLTAALGSVVLIGRAMGLPAGTILSMLPKSATAPVAIGVSEGIGGSPTLTAV
LVILTGIVGAVLAPPLLALLRIRDPRARGFAVGLAAHGIGTAQMMLTDARAGAFAGIGLGVGAVTTALVAPLVAHWLF

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=215, Percent_Identity=37.2093023255814, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24252; Mature: 24252

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDVTEIWSYLAHGPLLWLALTLAAFVAGSFLFERAGRRAWANPVLIAVALVAAALELTG
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC
TSYATYFEGAQFVHFMLGPVTVALATPLWDNRAAVRRSLLPMAAALAAGLTAALGSVVLI
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRAMGLPAGTILSMLPKSATAPVAIGVSEGIGGSPTLTAVLVILTGIVGAVLAPPLLALL
HHHHCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRDPRARGFAVGLAAHGIGTAQMMLTDARAGAFAGIGLGVGAVTTALVAPLVAHWLF
HHCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDVTEIWSYLAHGPLLWLALTLAAFVAGSFLFERAGRRAWANPVLIAVALVAAALELTG
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC
TSYATYFEGAQFVHFMLGPVTVALATPLWDNRAAVRRSLLPMAAALAAGLTAALGSVVLI
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRAMGLPAGTILSMLPKSATAPVAIGVSEGIGGSPTLTAVLVILTGIVGAVLAPPLLALL
HHHHCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRDPRARGFAVGLAAHGIGTAQMMLTDARAGAFAGIGLGVGAVTTALVAPLVAHWLF
HHCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]