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The map label for this gene is yciR [C]

Identifier: 77461739

GI number: 77461739

Start: 6185626

End: 6187296

Strand: Reverse

Name: yciR [C]

Synonym: Pfl01_5518

Alternate gene names: 77461739

Gene position: 6187296-6185626 (Counterclockwise)

Preceding gene: 77461742

Following gene: 77461737

Centisome position: 96.1

GC content: 64.51

Gene sequence:

>1671_bases
TTGACTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGAAGAGCCAGCGTGGACAGCGTTATTGCGCGAGTGTCT
GGCTCCGTTGGGGAGTGCGGCGGTGCTGATCAGCGCGCCGAGCTGGGAGTCGGTCAGCAGTCTGTTCGAAGAAAACCGCC
ATGCGGTGTTGTTGACCGTTCCCGCCTTGCAGCCGGCGCCCGGCCGTTGCAGCCTGCCGACAGTGTTGCTGCTGGAGCAC
GAACCGGCAACCGCGCCCGACGGCGTCAGCGACTGGCTGGTGTTCGATGCCCTCGATACCGACATGCTCCGGCGTTGCCT
GCGGCATGTGCGCGAACGCGGCGTGCTGGAAAACACCCTGCAACGCCTGGCCGAGCAGGATCCGCTGACCGGCATCGCCA
ATCGTCAGGGCTTCCAGACCCTGCTCACGGCCCGTCTGGCGGAAAACGACGGCCGCGGCCTGGCCCTCGGGCACCTCGAT
CTCGACAACTTCCGCCACGCCAACGACGCTCTCGGCCACCAGGCCGGCGACCGCCTGATCCTGCAAGTCGTCGCACGGCT
GAAAAGTCAGCTGGAAATCGGCGATCAACTGGCGCGCCTCGGCAGCGACGAATTCGCCCTGCTGATCGACACTCGCCGCG
CCCCGCAACGGGCAGAATGGATGGCCGAACGCATCACCGAAGCGCTGGCTGAACCTTACTGGGTCGATGGCGAAAGCCTG
CTGATCGGCTCCAGCCTCGGCATCGCCCATGCGCGGGCCCAGGGCGGCGCCGATCCGTTGATGTGGCACGCGCACATCGC
CATGCAGCAGGCCAAGAGCACTCAGGGCTGCACTTTTCACATCTTCAACGAGCGGATCAACCGCAACGCGCGGAGCATGG
CCGACCTCGAAAGCGAGCTGCGCCGGGCTTTGCGTCGCGATGAATTGGAGCTGCATTACCAGCCGCGCCTGAACCTGCAG
GACGGCCAGATCGTCGGCCTCGAAGCGCTGGTGCGCTGGCGTCACAGTGAGCGCGGCCTGCTGCCGCCGAGTGAATTCGT
GCCGCTGGCCGAGCAGAGCGGTCTGATCGTGCCGCTGGGTTACTGGGTGATTTCCCGGGCCCTGCGCGACATGCAGGCGT
TGCGCGAGCGCGGACTGCCGGCGCTGCACATGGCGATCAACCTGTCGTTTCGCCAGTTTCAGGACAGTCAGTTGCTGCCG
ACGCTCAGTCGTCTGATCGCCGAGCGCGGCGTCGAGGCGCAGTGGCTGGAATTCGAACTCACCGAAACCGCCGTGATGCG
CCGCAGCGATCTGGTCAAGCAGACCATGGACGCCCTCGGTCGCCTCGGCGTGCGTTTTTCGCTGGATGATTTCGGCACCG
GGTTCTCATCGTTCGTGCACCTCAACAGCCTGCCGATCACCTTGCTGAAGATCGACAAGAGCTTCGTCGGCGGCATGGAG
CAGCGCGAAGAGAACCGCAAACTGGTGCACGCGATGATCAATCTTGCGCACAACCTGCACCTGGAAGTGGTGGCCGAAGG
GGTGGAAACCCGGGAGCAACTGGATCTGTTGCGCGGGTTCGGCTGCGATCAGGTGCAGGGTTACCTGATCAGCAAGCCGC
TGCCGTTGGCGGAACTGGTTGAATATCTGGTGGTTGACGCCAGCCAGCCGCCGCTGGGTATCGTGGTTTAG

Upstream 100 bases:

>100_bases
ACACAAAATAACGTTTTGCTTACCGTTGTCGTTTGGTCATTGGTTGCCGCAACGGCATAATGCCCGCCGCCCACATCATT
GCAGAGTCTAGGGAGTCAGC

Downstream 100 bases:

>100_bases
CCTCAAATCCCTGTGGGAGCGAGCTTGCTCCCACAGGGAAACTCATTCCGGCTGAGCGATCTTGAAACCTTGAGATTGCG
GCTCAAGCCGAATCATTCGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MTTPVEPLRLLLLAEEPAWTALLRECLAPLGSAAVLISAPSWESVSSLFEENRHAVLLTVPALQPAPGRCSLPTVLLLEH
EPATAPDGVSDWLVFDALDTDMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLD
LDNFRHANDALGHQAGDRLILQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESL
LIGSSLGIAHARAQGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESELRRALRRDELELHYQPRLNLQ
DGQIVGLEALVRWRHSERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLP
TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGME
QREENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQVQGYLISKPLPLAELVEYLVVDASQPPLGIVV

Sequences:

>Translated_556_residues
MTTPVEPLRLLLLAEEPAWTALLRECLAPLGSAAVLISAPSWESVSSLFEENRHAVLLTVPALQPAPGRCSLPTVLLLEH
EPATAPDGVSDWLVFDALDTDMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLD
LDNFRHANDALGHQAGDRLILQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESL
LIGSSLGIAHARAQGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESELRRALRRDELELHYQPRLNLQ
DGQIVGLEALVRWRHSERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLP
TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGME
QREENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQVQGYLISKPLPLAELVEYLVVDASQPPLGIVV
>Mature_555_residues
TTPVEPLRLLLLAEEPAWTALLRECLAPLGSAAVLISAPSWESVSSLFEENRHAVLLTVPALQPAPGRCSLPTVLLLEHE
PATAPDGVSDWLVFDALDTDMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLDL
DNFRHANDALGHQAGDRLILQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESLL
IGSSLGIAHARAQGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESELRRALRRDELELHYQPRLNLQD
GQIVGLEALVRWRHSERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLPT
LSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGMEQ
REENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQVQGYLISKPLPLAELVEYLVVDASQPPLGIVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=417, Percent_Identity=36.6906474820144, Blast_Score=266, Evalue=4e-72,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=31.6666666666667, Blast_Score=228, Evalue=7e-61,
Organism=Escherichia coli, GI87081845, Length=271, Percent_Identity=33.5793357933579, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=35.5648535564854, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1786507, Length=262, Percent_Identity=33.587786259542, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=26.7734553775744, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=35.5731225296443, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1787055, Length=266, Percent_Identity=31.9548872180451, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081743, Length=259, Percent_Identity=35.1351351351351, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=32.520325203252, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788849, Length=463, Percent_Identity=26.5658747300216, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=23.9904988123515, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=453, Percent_Identity=23.841059602649, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=107, Percent_Identity=37.3831775700935, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=33.974358974359, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=451, Percent_Identity=23.2815964523282, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=155, Percent_Identity=31.6129032258064, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=30.7262569832402, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62040; Mature: 61909

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPVEPLRLLLLAEEPAWTALLRECLAPLGSAAVLISAPSWESVSSLFEENRHAVLLTV
CCCCCCHHEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEE
PALQPAPGRCSLPTVLLLEHEPATAPDGVSDWLVFDALDTDMLRRCLRHVRERGVLENTL
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHEEHHCCHHHHHHHHHHHHHCCHHHHHH
QRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLDLDNFRHANDALGHQAGDRLI
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHH
LQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCE
LIGSSLGIAHARAQGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESEL
EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHHHHHH
RRALRRDELELHYQPRLNLQDGQIVGLEALVRWRHSERGLLPPSEFVPLAEQSGLIVPLG
HHHHHCCCCEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCEEEHH
YWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLPTLSRLIAERGVEAQWLEFEL
HHHHHHHHHHHHHHHHCCCCEEEHEEECHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEH
TETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGME
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHEEECCCCEEEEEECHHHHCCHH
QREENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQVQGYLISKPLPLAELV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHHH
EYLVVDASQPPLGIVV
HHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TTPVEPLRLLLLAEEPAWTALLRECLAPLGSAAVLISAPSWESVSSLFEENRHAVLLTV
CCCCCHHEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEE
PALQPAPGRCSLPTVLLLEHEPATAPDGVSDWLVFDALDTDMLRRCLRHVRERGVLENTL
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHEEHHCCHHHHHHHHHHHHHCCHHHHHH
QRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLDLDNFRHANDALGHQAGDRLI
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHH
LQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCE
LIGSSLGIAHARAQGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESEL
EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHHHHHH
RRALRRDELELHYQPRLNLQDGQIVGLEALVRWRHSERGLLPPSEFVPLAEQSGLIVPLG
HHHHHCCCCEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCEEEHH
YWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLPTLSRLIAERGVEAQWLEFEL
HHHHHHHHHHHHHHHHCCCCEEEHEEECHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEH
TETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGME
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHEEECCCCEEEEEECHHHHCCHH
QREENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQVQGYLISKPLPLAELV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHHH
EYLVVDASQPPLGIVV
HHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]