Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is lon [H]
Identifier: 77459917
GI number: 77459917
Start: 4181812
End: 4184208
Strand: Reverse
Name: lon [H]
Synonym: Pfl01_3695
Alternate gene names: 77459917
Gene position: 4184208-4181812 (Counterclockwise)
Preceding gene: 77459918
Following gene: 77459916
Centisome position: 64.99
GC content: 57.99
Gene sequence:
>2397_bases ATGAAGACCACCATCGAATTGCCTCTCCTGCCATTGCGTGATGTCGTTGTGTATCCGCACATGGTTATCCCGCTGTTCGT GGGGCGCGAGAAATCCATCGAAGCCCTCGAGGCTGCGATGACGGGCGACAAGCAGATCCTGCTGCTGGCCCAGAGAAACC CGGCTGACGACGATCCCGGTGAAGAAGCTCTCTATCGCGTAGGTACTATCGCCACTGTTCTGCAGTTGCTGAAGCTGCCG GACGGCACCGTCAAGGTTCTGGTCGAGGGCGAGCAGCGTGGTGCTGTCGAGCGCTTCAGCGAAGTTGATGGCCACTGCCG TGCTGAAGTGTCGCTGATCGACGAAGTCGACGCCGCCGAGCGCGAATCCGAAGTGTTCGTGCGCAGCCTGCTGTCGCAGT TCGAACAATATGTGCAGCTGGGCAAGAAAGTCCCGGCTGAAGTCCTGTCGTCGCTCAACAGCATCGACGAGCCTGGCCGC CTGGTAGACACCATGGCCGCGCACATGGCGCTGAAGATCGAGCAGAAGCAGGAAATCCTCGAAATCATCGATTTGTCGGC CCGGGTCGAGCACGTTCTGGCCTTGCTGGACGCCGAGATCGACCTGCTGCAAGTCGAAAAACGCATTCGTGGCCGCGTCA AAAAGCAAATGGAGCGCAGTCAGCGCGAGTACTACCTGAACGAGCAGATGAAGGCCATTCAGAAAGAACTCGGCGACAGC GACGAAGGCCACAACGAAATCGAAGACCTGAAAAAGCGCATCGACGCTGCCGGTCTGCCGAAAGATGCCCTGGCCAAGGC CACTGCCGAGCTGAACAAGCTCAAGCAAATGTCGCCGATGTCCGCCGAAGCCACCGTGGTGCGCTCGTACATCGACTGGC TGGTTCAAGTGCCGTGGAAGGCTCAGAGCAAGGTACGTCTGGACCTGGCCCGTGCCGAAGACATTCTCGACGCCGATCAC TACGGCCTGGAAGAGGTCAAGGAACGCATCCTTGAATACCTCGCCGTGCAGAAACGCGTGAAAAAGATCCGTGGCCCGGT GTTGTGCCTGGTCGGTCCTCCAGGCGTGGGTAAAACCTCGCTGGCCGAGTCGATCGCCCATGCCACCAACCGCAAATTCG TGCGCATGGCCCTCGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGTCGGACTTACATCGGTTCGATGCCAGGA AGATTGATTCAAAAGATGACAAAAGTGGGTGTGCGCAACCCGCTGTTCCTGCTCGATGAAATCGACAAAATGGGCAGCGA CATGCGTGGCGACCCGGCGTCGGCGTTGCTGGAAGTGCTCGATCCTGAGCAGAACCACAACTTCAACGACCACTATCTGG AAGTCGATTACGACCTCTCGGATGTGATGTTCCTGTGCACCTCGAACTCGATGAACATTCCACCGGCGCTGCTGGACCGG ATGGAAGTCATCCGTCTGCCGGGCTACACCGAAGACGAGAAGATCAACATCGCGGTCAAGTACCTGTCGCCAAAACAGAT TGCAGCCAATGGCCTGAAGAAGGGCGAGCTGGAATTCGACGAAGAAGCGATCCGCGACATCATCCGTTACTACACCCGCG AAGCCGGTGTACGTGGCCTCGAGCGGCAGATTGCCAAGGTCTGCCGCAAGGCGGTCAAAGAGCACGCGCTGGAAAAACGT TTCTCGGTAAAAGTGACAGCTGATCTGCTGGAGCATTTCCTCGGCGTTCGCAAGTTCCGCTACGGTCTGGCCGAGCAACA GGATCAGATCGGTCAAGTGACCGGCCTGGCCTGGACTCAGGTGGGCGGCGAACTGCTGACCATCGAAGCCGCCGTGGTGC CGGGTAAAGGTCAACTGATCAAGACCGGTTCGCTGGGTGACGTAATGGTCGAATCGATCACTGCGGCCCTGACCGTGGTG CGTAGCCGTGCCAAGAGCCTGGGCATTCCCCTGGACTTCCACGAGAAGCGCGACACGCACATCCACATGCCGGAAGGTGC TACGCCGAAAGACGGCCCGAGCGCCGGTGTAGGCATGTGTACTGCGCTGGTGTCGGCTTTGACGGGGATTCCTGTGCGTG CCGATGTTGCCATGACCGGCGAGATCACCCTGCGTGGTCAGGTTCTTGCCATTGGCGGTCTGAAGGAAAAACTGCTGGCC GCTCACCGTGGCGGAATCAAGACTGTGATTATTCCGGAAGAGAACGTGCGCGATCTGAAGGAGATTCCTGACAATATCAA GCAGGATCTGCAGATCAAACCGGTTAAATGGATTGACGAGGTCCTGCAAATTGCGCTGCAATACGCGCCGGAGCCCTTGC CGGATGTGGCTCCGGAGATAGTTGCCAAGGACGAAAAACGTGAGTCTGACTCTAAGGAAAGAATTAGCACGCATTAA
Upstream 100 bases:
>100_bases CATCCGCTTTGCGCTTGTTTTTTTTCAAGTCAGCCCCCATCTTGGTTTCAAGTTTAATTCCATCTGATTACGGCCGTATG GCCGCCGTAGAGGCGAAATC
Downstream 100 bases:
>100_bases TACGCTTTTGCCTGGGGGGCTTCCTTGACAGCTTTTTAGAGCCCTTGTTATAAAGCGGCTCTTAAGTGTCTGTAGGCCAT TCAGCACTCGTTTTTGCTTT
Product: Lon-A peptidase
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMTGDKQILLLAQRNPADDDPGEEALYRVGTIATVLQLLKLP DGTVKVLVEGEQRGAVERFSEVDGHCRAEVSLIDEVDAAERESEVFVRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPGR LVDTMAAHMALKIEQKQEILEIIDLSARVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELGDS DEGHNEIEDLKKRIDAAGLPKDALAKATAELNKLKQMSPMSAEATVVRSYIDWLVQVPWKAQSKVRLDLARAEDILDADH YGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGKTSLAESIAHATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPG RLIQKMTKVGVRNPLFLLDEIDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSMNIPPALLDR MEVIRLPGYTEDEKINIAVKYLSPKQIAANGLKKGELEFDEEAIRDIIRYYTREAGVRGLERQIAKVCRKAVKEHALEKR FSVKVTADLLEHFLGVRKFRYGLAEQQDQIGQVTGLAWTQVGGELLTIEAAVVPGKGQLIKTGSLGDVMVESITAALTVV RSRAKSLGIPLDFHEKRDTHIHMPEGATPKDGPSAGVGMCTALVSALTGIPVRADVAMTGEITLRGQVLAIGGLKEKLLA AHRGGIKTVIIPEENVRDLKEIPDNIKQDLQIKPVKWIDEVLQIALQYAPEPLPDVAPEIVAKDEKRESDSKERISTH
Sequences:
>Translated_798_residues MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMTGDKQILLLAQRNPADDDPGEEALYRVGTIATVLQLLKLP DGTVKVLVEGEQRGAVERFSEVDGHCRAEVSLIDEVDAAERESEVFVRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPGR LVDTMAAHMALKIEQKQEILEIIDLSARVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELGDS DEGHNEIEDLKKRIDAAGLPKDALAKATAELNKLKQMSPMSAEATVVRSYIDWLVQVPWKAQSKVRLDLARAEDILDADH YGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGKTSLAESIAHATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPG RLIQKMTKVGVRNPLFLLDEIDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSMNIPPALLDR MEVIRLPGYTEDEKINIAVKYLSPKQIAANGLKKGELEFDEEAIRDIIRYYTREAGVRGLERQIAKVCRKAVKEHALEKR FSVKVTADLLEHFLGVRKFRYGLAEQQDQIGQVTGLAWTQVGGELLTIEAAVVPGKGQLIKTGSLGDVMVESITAALTVV RSRAKSLGIPLDFHEKRDTHIHMPEGATPKDGPSAGVGMCTALVSALTGIPVRADVAMTGEITLRGQVLAIGGLKEKLLA AHRGGIKTVIIPEENVRDLKEIPDNIKQDLQIKPVKWIDEVLQIALQYAPEPLPDVAPEIVAKDEKRESDSKERISTH >Mature_798_residues MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMTGDKQILLLAQRNPADDDPGEEALYRVGTIATVLQLLKLP DGTVKVLVEGEQRGAVERFSEVDGHCRAEVSLIDEVDAAERESEVFVRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPGR LVDTMAAHMALKIEQKQEILEIIDLSARVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELGDS DEGHNEIEDLKKRIDAAGLPKDALAKATAELNKLKQMSPMSAEATVVRSYIDWLVQVPWKAQSKVRLDLARAEDILDADH YGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGKTSLAESIAHATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPG RLIQKMTKVGVRNPLFLLDEIDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSMNIPPALLDR MEVIRLPGYTEDEKINIAVKYLSPKQIAANGLKKGELEFDEEAIRDIIRYYTREAGVRGLERQIAKVCRKAVKEHALEKR FSVKVTADLLEHFLGVRKFRYGLAEQQDQIGQVTGLAWTQVGGELLTIEAAVVPGKGQLIKTGSLGDVMVESITAALTVV RSRAKSLGIPLDFHEKRDTHIHMPEGATPKDGPSAGVGMCTALVSALTGIPVRADVAMTGEITLRGQVLAIGGLKEKLLA AHRGGIKTVIIPEENVRDLKEIPDNIKQDLQIKPVKWIDEVLQIALQYAPEPLPDVAPEIVAKDEKRESDSKERISTH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=775, Percent_Identity=39.8709677419355, Blast_Score=522, Evalue=1e-148, Organism=Homo sapiens, GI21396489, Length=642, Percent_Identity=41.2772585669782, Blast_Score=494, Evalue=1e-139, Organism=Escherichia coli, GI1786643, Length=767, Percent_Identity=71.3168187744459, Blast_Score=1102, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=682, Percent_Identity=41.0557184750733, Blast_Score=482, Evalue=1e-136, Organism=Caenorhabditis elegans, GI17556486, Length=789, Percent_Identity=32.1926489226869, Blast_Score=414, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6319449, Length=675, Percent_Identity=40.4444444444444, Blast_Score=498, Evalue=1e-141, Organism=Drosophila melanogaster, GI221513036, Length=625, Percent_Identity=44, Blast_Score=498, Evalue=1e-141, Organism=Drosophila melanogaster, GI24666867, Length=625, Percent_Identity=44, Blast_Score=498, Evalue=1e-141,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88760; Mature: 88760
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMTGDKQILLLAQRNPADDDPG CCCEEECCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH EEALYRVGTIATVLQLLKLPDGTVKVLVEGEQRGAVERFSEVDGHCRAEVSLIDEVDAAE HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH RESEVFVRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPGRLVDTMAAHMALKIEQKQEIL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH EIIDLSARVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELGDS HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DEGHNEIEDLKKRIDAAGLPKDALAKATAELNKLKQMSPMSAEATVVRSYIDWLVQVPWK CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC AQSKVRLDLARAEDILDADHYGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGKTS CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LAESIAHATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGRLIQKMTKVGVRNPLFLLDE HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH IDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSMNIPPALLDR HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHEEEEECCCCCCCHHHHHH MEVIRLPGYTEDEKINIAVKYLSPKQIAANGLKKGELEFDEEAIRDIIRYYTREAGVRGL HHHHCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERQIAKVCRKAVKEHALEKRFSVKVTADLLEHFLGVRKFRYGLAEQQDQIGQVTGLAWTQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH VGGELLTIEAAVVPGKGQLIKTGSLGDVMVESITAALTVVRSRAKSLGIPLDFHEKRDTH CCCEEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE IHMPEGATPKDGPSAGVGMCTALVSALTGIPVRADVAMTGEITLRGQVLAIGGLKEKLLA EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEEEEEEEECCHHHHHHH AHRGGIKTVIIPEENVRDLKEIPDNIKQDLQIKPVKWIDEVLQIALQYAPEPLPDVAPEI HHCCCCEEEEECCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH VAKDEKRESDSKERISTH HCCCHHHCCCHHHHCCCC >Mature Secondary Structure MKTTIELPLLPLRDVVVYPHMVIPLFVGREKSIEALEAAMTGDKQILLLAQRNPADDDPG CCCEEECCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH EEALYRVGTIATVLQLLKLPDGTVKVLVEGEQRGAVERFSEVDGHCRAEVSLIDEVDAAE HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH RESEVFVRSLLSQFEQYVQLGKKVPAEVLSSLNSIDEPGRLVDTMAAHMALKIEQKQEIL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH EIIDLSARVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELGDS HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DEGHNEIEDLKKRIDAAGLPKDALAKATAELNKLKQMSPMSAEATVVRSYIDWLVQVPWK CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC AQSKVRLDLARAEDILDADHYGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGKTS CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LAESIAHATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGRLIQKMTKVGVRNPLFLLDE HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH IDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSMNIPPALLDR HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHEEEEECCCCCCCHHHHHH MEVIRLPGYTEDEKINIAVKYLSPKQIAANGLKKGELEFDEEAIRDIIRYYTREAGVRGL HHHHCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERQIAKVCRKAVKEHALEKRFSVKVTADLLEHFLGVRKFRYGLAEQQDQIGQVTGLAWTQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH VGGELLTIEAAVVPGKGQLIKTGSLGDVMVESITAALTVVRSRAKSLGIPLDFHEKRDTH CCCEEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE IHMPEGATPKDGPSAGVGMCTALVSALTGIPVRADVAMTGEITLRGQVLAIGGLKEKLLA EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEEEEEEEECCHHHHHHH AHRGGIKTVIIPEENVRDLKEIPDNIKQDLQIKPVKWIDEVLQIALQYAPEPLPDVAPEI HHCCCCEEEEECCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH VAKDEKRESDSKERISTH HCCCHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]