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The map label for this gene is yodB [H]

Identifier: 77459907

GI number: 77459907

Start: 4169808

End: 4170362

Strand: Direct

Name: yodB [H]

Synonym: Pfl01_3685

Alternate gene names: 77459907

Gene position: 4169808-4170362 (Clockwise)

Preceding gene: 77459906

Following gene: 77459910

Centisome position: 64.76

GC content: 58.2

Gene sequence:

>555_bases
ATGCCGTGGACAAATTCAGAATCCCGTTACAGCACCGTGTCGATCCTGTTGCACTGGCTGATGCTGGTGCTGTTGGTACT
GGTGTACGCCAGCATGGAATTGCGTGGTCTGTTTCCCAAGGGCAGCGGCGGCCGCACGCTGATCCGCGAAGTGCATTACA
TGCTTGGGCTGACGGTATTCGTGCTGGTCTGGTTTCGCCTGTTCGCCCGCAGCCTGGGCCCGGCGCCGAAAATCTTCCCG
GCCTCGCCACCGTGGCAAACCATCCTCGCACGCTTGATGCACTGGGCCTTGTACCTGTTCATGATCAGCATGCCGATCCT
CGGCTGGCTGATCACCAGCGCCGAAGGTCATCAGGTGATGTTCTACGGTTTCGATCTGCCTCTTTTGGTGAGTGAAGACA
AGGTGTTCGCCAAAGAGGTTGAGCACTGGCATGTGCTGATCAGCACCATCGGCTACTGGCTGATCGGTCTGCATGCGCTG
GCGGGGATCTATCACCATTACGTGGTGCGCGATAACACGTTGCTGCGGATGATGCCCAAGCGCAGCCAGGGTTAG

Upstream 100 bases:

>100_bases
AAGCTTTTTTAGCCTCGGGCAAACGCGCCAAAGGGGATTACAGTTAAGGCATGCCGTCGCAGAACGGCACGCTTGAGCCC
TGAACCGTGAGGAACGCCGT

Downstream 100 bases:

>100_bases
CCGTCAAAGCCGCGCCGCCCCTGCAAGCCGCCGGTGTGGACGAAGATCAAGCGTGAACCCCGAGCAAAGCGGCCCGCCTC
GACCTGTTGCTTGAGCGCCA

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MPWTNSESRYSTVSILLHWLMLVLLVLVYASMELRGLFPKGSGGRTLIREVHYMLGLTVFVLVWFRLFARSLGPAPKIFP
ASPPWQTILARLMHWALYLFMISMPILGWLITSAEGHQVMFYGFDLPLLVSEDKVFAKEVEHWHVLISTIGYWLIGLHAL
AGIYHHYVVRDNTLLRMMPKRSQG

Sequences:

>Translated_184_residues
MPWTNSESRYSTVSILLHWLMLVLLVLVYASMELRGLFPKGSGGRTLIREVHYMLGLTVFVLVWFRLFARSLGPAPKIFP
ASPPWQTILARLMHWALYLFMISMPILGWLITSAEGHQVMFYGFDLPLLVSEDKVFAKEVEHWHVLISTIGYWLIGLHAL
AGIYHHYVVRDNTLLRMMPKRSQG
>Mature_183_residues
PWTNSESRYSTVSILLHWLMLVLLVLVYASMELRGLFPKGSGGRTLIREVHYMLGLTVFVLVWFRLFARSLGPAPKIFPA
SPPWQTILARLMHWALYLFMISMPILGWLITSAEGHQVMFYGFDLPLLVSEDKVFAKEVEHWHVLISTIGYWLIGLHALA
GIYHHYVVRDNTLLRMMPKRSQG

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=175, Percent_Identity=41.1428571428571, Blast_Score=143, Evalue=8e-36,
Organism=Escherichia coli, GI87081903, Length=175, Percent_Identity=37.1428571428571, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787296, Length=184, Percent_Identity=27.1739130434783, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 21240; Mature: 21108

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWTNSESRYSTVSILLHWLMLVLLVLVYASMELRGLFPKGSGGRTLIREVHYMLGLTVF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VLVWFRLFARSLGPAPKIFPASPPWQTILARLMHWALYLFMISMPILGWLITSAEGHQVM
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FYGFDLPLLVSEDKVFAKEVEHWHVLISTIGYWLIGLHALAGIYHHYVVRDNTLLRMMPK
EEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCC
RSQG
CCCC
>Mature Secondary Structure 
PWTNSESRYSTVSILLHWLMLVLLVLVYASMELRGLFPKGSGGRTLIREVHYMLGLTVF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VLVWFRLFARSLGPAPKIFPASPPWQTILARLMHWALYLFMISMPILGWLITSAEGHQVM
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FYGFDLPLLVSEDKVFAKEVEHWHVLISTIGYWLIGLHALAGIYHHYVVRDNTLLRMMPK
EEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCC
RSQG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]