Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is 77459893
Identifier: 77459893
GI number: 77459893
Start: 4155319
End: 4155819
Strand: Reverse
Name: 77459893
Synonym: Pfl01_3671
Alternate gene names: NA
Gene position: 4155819-4155319 (Counterclockwise)
Preceding gene: 77459894
Following gene: 77459892
Centisome position: 64.55
GC content: 64.07
Gene sequence:
>501_bases ATGGCCCGGCATGGCGGTGCGGTGCTGTTTCTGTTGTGTGCGGGCAGCTTGCCGCTGCCGTTGGCGGCGGTGACCAGCCA GAGCTTTCAGGTCAGTGCCACAGTGACACCGGGCTGTCTGGTGGTGGGGGGCGTATCGAACTATGGCGGGCTGAATTTCG GTTCGCGTTCGGCGCTGGCCACCGGCACGGTGCAGGTCGCATTGACCGGTGGTGTCACGCTGCAATGCACGCCGGGGGTG GCGCTGAACATGACGGTCGATGGCGGCCAGTACAACAGCGGCGGGCGACGCATGCAGATCAGCGGAGGCAGCGCGAAGGT GGCGTATGCGCTGTTTCGCGATGCGGCATACAGCCAGAGCCTGGGCATCGGTCAGAGTGTGGCGGTGGCCTACAGCGATG CGAACAACATCAGTCTGCCGATCTACGGACAGGTGCAATTGCCGGGTAATCAGCCCGGGGGGACATACAGCGATGTGTTG CAGGTGCAGCTGTCGTGGTGA
Upstream 100 bases:
>100_bases GCGCAGACCGTGAACATCTACGGTCAGGCGGTGGGCAAGGCCGGGCTGCCGGCGGGCACGTATACCGACACGATTTCCGT CGAACTGACGTTCTAGTGCC
Downstream 100 bases:
>100_bases TGTGAAATGACAAGGAGCAGGTTTATGGGGTTTTTCACGTCACGTTATTGGTCCGTGTGTTGCGCCGTGCTGGCGCTGGT CATGTTCGGGACGCTCAAGG
Product: spore coat U
Products: NA
Alternate protein names: CsuB Protein; Type I Pilus Protein CsuB; Spore Coat Protein U Domain-Contain Protein; Type I Pili; Fimbrial Subunit; Spore Coat U; Spore Coat U Domain Protein; Type 1 Pili Subunit CsuA/B Protein; Spore Coat Protein U Domain Family; Fimbrial Protein
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MARHGGAVLFLLCAGSLPLPLAAVTSQSFQVSATVTPGCLVVGGVSNYGGLNFGSRSALATGTVQVALTGGVTLQCTPGV ALNMTVDGGQYNSGGRRMQISGGSAKVAYALFRDAAYSQSLGIGQSVAVAYSDANNISLPIYGQVQLPGNQPGGTYSDVL QVQLSW
Sequences:
>Translated_166_residues MARHGGAVLFLLCAGSLPLPLAAVTSQSFQVSATVTPGCLVVGGVSNYGGLNFGSRSALATGTVQVALTGGVTLQCTPGV ALNMTVDGGQYNSGGRRMQISGGSAKVAYALFRDAAYSQSLGIGQSVAVAYSDANNISLPIYGQVQLPGNQPGGTYSDVL QVQLSW >Mature_165_residues ARHGGAVLFLLCAGSLPLPLAAVTSQSFQVSATVTPGCLVVGGVSNYGGLNFGSRSALATGTVQVALTGGVTLQCTPGVA LNMTVDGGQYNSGGRRMQISGGSAKVAYALFRDAAYSQSLGIGQSVAVAYSDANNISLPIYGQVQLPGNQPGGTYSDVLQ VQLSW
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16760; Mature: 16629
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARHGGAVLFLLCAGSLPLPLAAVTSQSFQVSATVTPGCLVVGGVSNYGGLNFGSRSALA CCCCCCEEEEEEECCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEE TGTVQVALTGGVTLQCTPGVALNMTVDGGQYNSGGRRMQISGGSAKVAYALFRDAAYSQS ECEEEEEEECCEEEEECCCEEEEEEECCCEECCCCCEEEEECCCCEEEEEEHHCCCCCCC LGIGQSVAVAYSDANNISLPIYGQVQLPGNQPGGTYSDVLQVQLSW CCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure ARHGGAVLFLLCAGSLPLPLAAVTSQSFQVSATVTPGCLVVGGVSNYGGLNFGSRSALA CCCCCEEEEEEECCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEE TGTVQVALTGGVTLQCTPGVALNMTVDGGQYNSGGRRMQISGGSAKVAYALFRDAAYSQS ECEEEEEEECCEEEEECCCEEEEEEECCCEECCCCCEEEEECCCCEEEEEEHHCCCCCCC LGIGQSVAVAYSDANNISLPIYGQVQLPGNQPGGTYSDVLQVQLSW CCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA