Click here to switch to the map view.

The map label for this gene is ybjK [C]

Identifier: 77458977

GI number: 77458977

Start: 3174265

End: 3174846

Strand: Direct

Name: ybjK [C]

Synonym: Pfl01_2752

Alternate gene names: 77458977

Gene position: 3174265-3174846 (Clockwise)

Preceding gene: 77458964

Following gene: 77458980

Centisome position: 49.3

GC content: 56.36

Gene sequence:

>582_bases
ATGGCCAGAATGGGCGCTGAATTACGCCGGCAGGATTTCGTCGAAGCAACGATCAAAGTGATTGCCGAGCACGGTGTCGC
CAATGCAACGACCCGACGGATTGCGGCGGCGGCCGGTTGTCCGTTGGCATCGTTGCATTACGTGTTCCATACCAAGAACG
ACCTCTTCTATGCCGTCTATGAGTCACTGTTTAACCTGCCTCATCAAGCGTTGGAACACGTCCCTGCCGGGACAACTGCC
GCTGATACGACTGCCGAAGTCCTGCGACAGTTGATCACTTGGTTCATCGATCATCCGGATGCGGCCAAGGCGCAGAGTGA
GTTGTTTTTTTGGGCACTGCGCAATGACCCCGAAATGGCAAGCAAGATTTACTCAGTAGCCATTGAAGCGACTGAGCAGG
CACTGGAGCGAGCTGTAGGCGCAGAGCTGGGGGAAAAGTTTTTAAAGGCCGCAAGTCGGCTTCTGGTCCAACTGGTTGAC
GGGTTGACTATCGCGTGGTCCGCCCATGGAGACCTGCATAGATTGAGAGCCGAAACCGAGACGGCTTGCGCCGCACTGGC
CCTGCTGGTGGCCAGTCACTGA

Upstream 100 bases:

>100_bases
TTCTTCCCTGACGCAAGGCGATTCGTTGCTGTAGCATCCGCAAGCGTCGACAGTGCCCTTACCGATAAAGGGCGCCAGGA
ATATTGGAGATTGCTGACCT

Downstream 100 bases:

>100_bases
GCCGATCACATGCTGCTGACCAGATGGCCTCCATCCACGGTCAGTACGCTGCCAGTCATGAATGCACCGGCGTCACTCGC
TAACAGCAAAAAGGGACCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MARMGAELRRQDFVEATIKVIAEHGVANATTRRIAAAAGCPLASLHYVFHTKNDLFYAVYESLFNLPHQALEHVPAGTTA
ADTTAEVLRQLITWFIDHPDAAKAQSELFFWALRNDPEMASKIYSVAIEATEQALERAVGAELGEKFLKAASRLLVQLVD
GLTIAWSAHGDLHRLRAETETACAALALLVASH

Sequences:

>Translated_193_residues
MARMGAELRRQDFVEATIKVIAEHGVANATTRRIAAAAGCPLASLHYVFHTKNDLFYAVYESLFNLPHQALEHVPAGTTA
ADTTAEVLRQLITWFIDHPDAAKAQSELFFWALRNDPEMASKIYSVAIEATEQALERAVGAELGEKFLKAASRLLVQLVD
GLTIAWSAHGDLHRLRAETETACAALALLVASH
>Mature_192_residues
ARMGAELRRQDFVEATIKVIAEHGVANATTRRIAAAAGCPLASLHYVFHTKNDLFYAVYESLFNLPHQALEHVPAGTTAA
DTTAEVLRQLITWFIDHPDAAKAQSELFFWALRNDPEMASKIYSVAIEATEQALERAVGAELGEKFLKAASRLLVQLVDG
LTIAWSAHGDLHRLRAETETACAALALLVASH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21091; Mature: 20960

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARMGAELRRQDFVEATIKVIAEHGVANATTRRIAAAAGCPLASLHYVFHTKNDLFYAVY
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
ESLFNLPHQALEHVPAGTTAADTTAEVLRQLITWFIDHPDAAKAQSELFFWALRNDPEMA
HHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCHHHH
SKIYSVAIEATEQALERAVGAELGEKFLKAASRLLVQLVDGLTIAWSAHGDLHRLRAETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
TACAALALLVASH
HHHHHHHHHHHCC
>Mature Secondary Structure 
ARMGAELRRQDFVEATIKVIAEHGVANATTRRIAAAAGCPLASLHYVFHTKNDLFYAVY
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
ESLFNLPHQALEHVPAGTTAADTTAEVLRQLITWFIDHPDAAKAQSELFFWALRNDPEMA
HHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCHHHH
SKIYSVAIEATEQALERAVGAELGEKFLKAASRLLVQLVDGLTIAWSAHGDLHRLRAETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
TACAALALLVASH
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA