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The map label for this gene is yjiR [H]

Identifier: 77458894

GI number: 77458894

Start: 3066835

End: 3068265

Strand: Direct

Name: yjiR [H]

Synonym: Pfl01_2669

Alternate gene names: 77458894

Gene position: 3066835-3068265 (Clockwise)

Preceding gene: 77458893

Following gene: 77458895

Centisome position: 47.63

GC content: 57.44

Gene sequence:

>1431_bases
ATGAGTGCATCACGAGAATCGGGTTTCGCCTATCAGGCTGTCTATCGTTATCTGACTCAGTTGATCGATGAACCAGGCAA
TCAAGGAGCGATCAGGTTGCCGTCACTAAGGCAGTTGTCCGAGCGACTGAACGTGTCCATCTCGACCATTCAGTACGCTT
ATGCCTTGCTGGAGAAGGAAGGCCGGGTCTACTCCGTAGCCAAATCAGGTTATTTTGCACAAGCAACGCCATCGTTCATG
CCGCCGGGAGGTGGCAACGATCTGCTGGAAACGGTCTGCGTAAGTGCCAGGTGCAACGGCATGCGCGTATTGAGCGGTGA
TGACCCGGCGGCGGCCCAGCCTCTGGACAGCCCGTTGTTGATGGTGGAGCGAGAACTGTTGCGTCAGTATCCACGGTATC
TGCAGACAGCCGCGCAGCCTTGCGGCGAGCTGGAACTGCGCACGCTTCTGGCTGCCCGCTATACCGCCTCGGCGACACAT
TGCTGGCATCCCGAAGACGTCTACATCGGCGCCGACTTGCGGGGGGTGCTGGAAATCCTGATTGCAGTTCTTGAACTGCG
ACATGCAACGGTGCTGATCGAATCCCCCTGCGACTGGGCGGTCCTGCGTCTGCTTCAGTCTTTTGACGTACAAGTCATTG
AACTGCCACTGCAGCCTGATGGCACATTTGATACAGAGCAACTTGAAACACTGCTCAAGATCGAACCTGTTCGGCTGATC
CTGTTGTCTTCCAGATTGAGCATGCCCCACGGCAGCCGTTTTCCTCAGGACAACCGGCATGCTGTCGCGCAGTTGCTCAT
CGGTCATGGCATCTGGGTACTGGAAAACGACTGTCATGGCGAGTTGCTGGACGATGCTGGAGGTCAACCTCTGCGCGAGT
TGCTGGATCCCGACCGCTTGTTGGTGTTTTCCAGCTTCGAAAAACACATTGGTGTCGAAGCCCCCTATGGTTTTGTGCTG
TCACGCCAATGGCGCAATGCTCTGCAGCGTCACTTCCTGCTGCGTTCGTTCCGGCTCTCGCCGATCCGCCAGAAAGCCAT
TGCGCGTCTCTATGCCAGCGGTCGAGTCGATCAGCATCTGGTGATACTGAAACGACTGCTCAGGGAGCGGCGTTCGCAAT
GGGTGCAGCTCATTCGCGAGCGCCTGGGCGATGTGCTGGATGTCGTCGAGCCACAGGGCGGCGCAACGATCTGGTTGCAA
TCCCGGCATGCGGTAGCGATGGACGCCGTGTTTCAACGGCTGCTGAAACAAAACGTATTGATTGCACCTGGGGAGTTGTT
CAGTATCCAGGGCCTGCATGCGCAGAACCTGCGTCTCGGCGTGATCGGCGGGGACGAGGAGGCGTTGTTAATACTTGTCG
GACTGCTCGGGGATGCGTTACGACTGGCTCCGCGGGCGGATGCTCGAAAACACCCGGCCTGTATGCAATAG

Upstream 100 bases:

>100_bases
GAAGTATCAGGTCATGAGACTTCACATGTTGACCGCAAGGCGGAAGGCTGAGTGTGAACGTATTGCCCGGACAAGGAAAA
ATGCCTGCGGACCCTGGCTC

Downstream 100 bases:

>100_bases
ACCCCATCGCACTCTGGACGAACTGCCAGTAAACTCGGTTTCAATTTCCTGAACCACTCTATTTCAGAGGTTTTGCATGA
CACTCAGTCCTTTTGCGGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSASRESGFAYQAVYRYLTQLIDEPGNQGAIRLPSLRQLSERLNVSISTIQYAYALLEKEGRVYSVAKSGYFAQATPSFM
PPGGGNDLLETVCVSARCNGMRVLSGDDPAAAQPLDSPLLMVERELLRQYPRYLQTAAQPCGELELRTLLAARYTASATH
CWHPEDVYIGADLRGVLEILIAVLELRHATVLIESPCDWAVLRLLQSFDVQVIELPLQPDGTFDTEQLETLLKIEPVRLI
LLSSRLSMPHGSRFPQDNRHAVAQLLIGHGIWVLENDCHGELLDDAGGQPLRELLDPDRLLVFSSFEKHIGVEAPYGFVL
SRQWRNALQRHFLLRSFRLSPIRQKAIARLYASGRVDQHLVILKRLLRERRSQWVQLIRERLGDVLDVVEPQGGATIWLQ
SRHAVAMDAVFQRLLKQNVLIAPGELFSIQGLHAQNLRLGVIGGDEEALLILVGLLGDALRLAPRADARKHPACMQ

Sequences:

>Translated_476_residues
MSASRESGFAYQAVYRYLTQLIDEPGNQGAIRLPSLRQLSERLNVSISTIQYAYALLEKEGRVYSVAKSGYFAQATPSFM
PPGGGNDLLETVCVSARCNGMRVLSGDDPAAAQPLDSPLLMVERELLRQYPRYLQTAAQPCGELELRTLLAARYTASATH
CWHPEDVYIGADLRGVLEILIAVLELRHATVLIESPCDWAVLRLLQSFDVQVIELPLQPDGTFDTEQLETLLKIEPVRLI
LLSSRLSMPHGSRFPQDNRHAVAQLLIGHGIWVLENDCHGELLDDAGGQPLRELLDPDRLLVFSSFEKHIGVEAPYGFVL
SRQWRNALQRHFLLRSFRLSPIRQKAIARLYASGRVDQHLVILKRLLRERRSQWVQLIRERLGDVLDVVEPQGGATIWLQ
SRHAVAMDAVFQRLLKQNVLIAPGELFSIQGLHAQNLRLGVIGGDEEALLILVGLLGDALRLAPRADARKHPACMQ
>Mature_475_residues
SASRESGFAYQAVYRYLTQLIDEPGNQGAIRLPSLRQLSERLNVSISTIQYAYALLEKEGRVYSVAKSGYFAQATPSFMP
PGGGNDLLETVCVSARCNGMRVLSGDDPAAAQPLDSPLLMVERELLRQYPRYLQTAAQPCGELELRTLLAARYTASATHC
WHPEDVYIGADLRGVLEILIAVLELRHATVLIESPCDWAVLRLLQSFDVQVIELPLQPDGTFDTEQLETLLKIEPVRLIL
LSSRLSMPHGSRFPQDNRHAVAQLLIGHGIWVLENDCHGELLDDAGGQPLRELLDPDRLLVFSSFEKHIGVEAPYGFVLS
RQWRNALQRHFLLRSFRLSPIRQKAIARLYASGRVDQHLVILKRLLRERRSQWVQLIRERLGDVLDVVEPQGGATIWLQS
RHAVAMDAVFQRLLKQNVLIAPGELFSIQGLHAQNLRLGVIGGDEEALLILVGLLGDALRLAPRADARKHPACMQ

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=444, Percent_Identity=26.3513513513513, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787710, Length=419, Percent_Identity=24.3436754176611, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53251; Mature: 53120

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASRESGFAYQAVYRYLTQLIDEPGNQGAIRLPSLRQLSERLNVSISTIQYAYALLEKE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHCC
GRVYSVAKSGYFAQATPSFMPPGGGNDLLETVCVSARCNGMRVLSGDDPAAAQPLDSPLL
CCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
MVERELLRQYPRYLQTAAQPCGELELRTLLAARYTASATHCWHPEDVYIGADLRGVLEIL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH
IAVLELRHATVLIESPCDWAVLRLLQSFDVQVIELPLQPDGTFDTEQLETLLKIEPVRLI
HHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHHEE
LLSSRLSMPHGSRFPQDNRHAVAQLLIGHGIWVLENDCHGELLDDAGGQPLRELLDPDRL
EEHHHCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCHHHHHCCCCCE
LVFSSFEKHIGVEAPYGFVLSRQWRNALQRHFLLRSFRLSPIRQKAIARLYASGRVDQHL
EEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHH
VILKRLLRERRSQWVQLIRERLGDVLDVVEPQGGATIWLQSRHAVAMDAVFQRLLKQNVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE
IAPGELFSIQGLHAQNLRLGVIGGDEEALLILVGLLGDALRLAPRADARKHPACMQ
ECCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SASRESGFAYQAVYRYLTQLIDEPGNQGAIRLPSLRQLSERLNVSISTIQYAYALLEKE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHCC
GRVYSVAKSGYFAQATPSFMPPGGGNDLLETVCVSARCNGMRVLSGDDPAAAQPLDSPLL
CCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
MVERELLRQYPRYLQTAAQPCGELELRTLLAARYTASATHCWHPEDVYIGADLRGVLEIL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH
IAVLELRHATVLIESPCDWAVLRLLQSFDVQVIELPLQPDGTFDTEQLETLLKIEPVRLI
HHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHHEE
LLSSRLSMPHGSRFPQDNRHAVAQLLIGHGIWVLENDCHGELLDDAGGQPLRELLDPDRL
EEHHHCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCHHHHHCCCCCE
LVFSSFEKHIGVEAPYGFVLSRQWRNALQRHFLLRSFRLSPIRQKAIARLYASGRVDQHL
EEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHH
VILKRLLRERRSQWVQLIRERLGDVLDVVEPQGGATIWLQSRHAVAMDAVFQRLLKQNVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE
IAPGELFSIQGLHAQNLRLGVIGGDEEALLILVGLLGDALRLAPRADARKHPACMQ
ECCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]