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The map label for this gene is rhaR [H]

Identifier: 77458694

GI number: 77458694

Start: 2822432

End: 2823517

Strand: Direct

Name: rhaR [H]

Synonym: Pfl01_2469

Alternate gene names: 77458694

Gene position: 2822432-2823517 (Clockwise)

Preceding gene: 77458688

Following gene: 77458695

Centisome position: 43.84

GC content: 62.52

Gene sequence:

>1086_bases
ATGTCAGTGAGGGAGGTTCGGTGCTCGATTCAACCCACGGCAAAAGCCCGATATCATCGAGCCGGTCTCCTGACGCGGCG
TGCGGGCAAGCGTCCGAGACCTGTCTGGCTTGGCACAGCCGAATCTGAAAAGGACGAGTTCATGGCACATACCGGGCGCA
CCTCCCAGGAACCGATGTCGACATCTTCTCGAGACTTGCGCATCACCGGCGAGTCGATGGGTGAGTTCCTGCCAGGCGAA
CCGCAGGCGTTACCCTCGCGCCCGGAAATCACCGACGTAGTGATTCAGCTGTTTACCCATCGCAGCGTTACTGAGCCCAT
TCTCGTGCCTGCGGTGGTGGAACCGCTGCTCGTTCTGGTTCTGGCCGGGGCGGCGACGGTAGAGGAGCGCGCATTGGGGG
GCGAGTGGGAAGCTGCGCAGGTCAGTGCCGGCGATTTTTTCCTCACCAGCTCCGATGAGCCGTATGAAATGCGCTGGCAG
ACGCACGGAGGCGATACCTTCGAGGTCATGCATCTTTATCTCGGCCTGCCGCTGATCGAGCAAGCGTCTCGAGAGCTGTC
GGGTCAGCACGCAGGGTCTGTGCGTTTGCGCGATGTTTCAGGGGCACGGGACGAGCGCGTCGCGTTTGTCATGGAGCAAT
TGCGCACCGAACTGCTTCTGGAACGCTCGCCCAGCGCGCTTTTCGCCCGCTCGCTGGCGCAGGCGCTGGCCGTGCATCTG
GTGCGCAGCTATCTGGCTGAAAGCCAGCCCGGGCGTCGGGTCAACGCCTTGCAAGCCTTCAAACTGCGCAAAGTCACCGA
CGCCATGCGCGCGCATCTGAGCGCTGAGTTCAGCCTGGCCAAACTGGCCAGCCTTGCCGAGCTGAGCGAGTACCACTTCA
GCCGCCTGTTCAAGCGGGCGACGGGGCTTTCGCCATCGCAGTACTTCATTCGCTTGCGCATGGCTCGCGCGCGGCACCTG
TTGCTGGAGACCCGTCTTGGCGTCATCGACATCGGGCTGGAGGTCGGCTACTCAAGCCCCAGTCATTTCTCGCAGGTATT
TCGTCGCGAAGTGGGCGTAACGCCCAGCGAGTTCCGTGGGGCCTGA

Upstream 100 bases:

>100_bases
GCGCCGGCGAGGCGCTGTCATCGGCGACGGGCCTACTGTCTCGCAGCGGAGTGAGGTCGGCTTTCGTGAGATTGCCCACG
CTGTCGGGGTTTTGCGCTGA

Downstream 100 bases:

>100_bases
GCGCCCCTACGCTACAAATTTGCAGGCGATGCACACAGACACGAATAGGCAAAAGTGGCGCAGGTTTCGGCACGCGCCGA
CGACGCCCGTGCCCTTAATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSVREVRCSIQPTAKARYHRAGLLTRRAGKRPRPVWLGTAESEKDEFMAHTGRTSQEPMSTSSRDLRITGESMGEFLPGE
PQALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLVLAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQ
THGGDTFEVMHLYLGLPLIEQASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHL
VRSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRATGLSPSQYFIRLRMARARHL
LLETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRGA

Sequences:

>Translated_361_residues
MSVREVRCSIQPTAKARYHRAGLLTRRAGKRPRPVWLGTAESEKDEFMAHTGRTSQEPMSTSSRDLRITGESMGEFLPGE
PQALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLVLAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQ
THGGDTFEVMHLYLGLPLIEQASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHL
VRSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRATGLSPSQYFIRLRMARARHL
LLETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRGA
>Mature_360_residues
SVREVRCSIQPTAKARYHRAGLLTRRAGKRPRPVWLGTAESEKDEFMAHTGRTSQEPMSTSSRDLRITGESMGEFLPGEP
QALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLVLAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQT
HGGDTFEVMHLYLGLPLIEQASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHLV
RSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRATGLSPSQYFIRLRMARARHLL
LETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRGA

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=152, Percent_Identity=32.8947368421053, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790339, Length=91, Percent_Identity=37.3626373626374, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40192; Mature: 40061

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVREVRCSIQPTAKARYHRAGLLTRRAGKRPRPVWLGTAESEKDEFMAHTGRTSQEPMS
CCHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCC
TSSRDLRITGESMGEFLPGEPQALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLV
CCCCCEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQTHGGDTFEVMHLYLGLPLIE
HHCCHHHHHHHCCCCCCEEEECCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHCCHHHH
QASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHL
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VRSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLSPSQYFIRLRMARARHLLLETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRG
HCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCC
A
C
>Mature Secondary Structure 
SVREVRCSIQPTAKARYHRAGLLTRRAGKRPRPVWLGTAESEKDEFMAHTGRTSQEPMS
CHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCC
TSSRDLRITGESMGEFLPGEPQALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLV
CCCCCEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQTHGGDTFEVMHLYLGLPLIE
HHCCHHHHHHHCCCCCCEEEECCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHCCHHHH
QASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHL
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VRSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLSPSQYFIRLRMARARHLLLETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRG
HCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA