| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is ytnP [H]
Identifier: 77458679
GI number: 77458679
Start: 2807923
End: 2808882
Strand: Direct
Name: ytnP [H]
Synonym: Pfl01_2454
Alternate gene names: 77458679
Gene position: 2807923-2808882 (Clockwise)
Preceding gene: 77458675
Following gene: 77458685
Centisome position: 43.61
GC content: 63.23
Gene sequence:
>960_bases ATGTCAACGTATCTGAATCACTCCAATCAAACCAACGCAACCGATGACCGGCAGGCGTCCGTCACCCGCCAGCCATTCGC TCCGGCGCAGGAGCTGGTGCCATCGCGCTACGCACTGCAGGTCGGCGACATCGACGTGGTGGTGATCAGCGACGGCGTGC TGCCGCTGCCGACCTCGACCATGTCCACAAATGCCGACCCGCAGGCTCGCGCCGCCTGGTTCAAGGACATGTTCCTGGGG CCGGACGCGTTTGACTGGGCACTCAACGTGCTGGTGGTGCGCAGCGGCGAGCAGATCATTCTGGTCGACGCCGGACTGGG CGGGCAGTTTCCCGGCTTCCCCCGGGCCGGCCAGTTGCCGAAACGCCTGGAAGCGGCGGGCATTGATCTGGCCAGCGTGA CTGACATTGTGATCACGCACATGCACATGGACCATGTCGGCGGTCTGCTGGTCGACGAGGTGAAGAGCCGGTTGCGTGCG GATGTGCGCATTCACGTCTCGGCAAAAGAGGTCGAGTTCTGGGAGACGCCGGACTTCACCCAGACCGTCATGCCGGCGCC AGTGCCTGACGTTCTGCGCGCGACGGCCAATCAGTTCATCAACGATTACCGCCGCCAGGTGCGCACCTTCGAGGATGAAT ACGAAGTGGCGCCGGGGGTGGTGGTGAAACTCACCGGCGGGCATACGCCGGGGCACAGCATTGTCTACGTCAACTCGGGC GGCGAACGCCTGACCTTTGCTGGCGACGCCCTGTTTCCGGTGGCCTTCGAGCATCCGGAATGGCACAACGGTTTCGAGCA TGATCCTGAAGAGTCGGTGCGTGTTCGCATGCGTCTGATGCGCGAAGCGGCGGCTAGTGGCGAGTGGTTTGTTGCCACCC ATCTGCCGTTCCCGTCGGTAGGTCGAGTGGCGGTCGATGGCGATGCGTTCCGCTGGATTGCAGCGTTCTGGGATTACTGA
Upstream 100 bases:
>100_bases GGTCGCGATGCACACTCGATTTCAAGGCGCGCCATTCAGCGCTTGCGCCAGCAAGGGCATTCGTCCGGGAAATTTTGACT CAGCCAAGAGGAAAGCGACC
Downstream 100 bases:
>100_bases TCGGCTGTCGGCGGCCCGGCTGCATTCTGCCGGGCTCGATAAAAATCAGGCCCCGCAAGTGATGAGCTTGCGGGGCCTTT TTTTGCTTTGAGGTTTGTTG
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSTYLNHSNQTNATDDRQASVTRQPFAPAQELVPSRYALQVGDIDVVVISDGVLPLPTSTMSTNADPQARAAWFKDMFLG PDAFDWALNVLVVRSGEQIILVDAGLGGQFPGFPRAGQLPKRLEAAGIDLASVTDIVITHMHMDHVGGLLVDEVKSRLRA DVRIHVSAKEVEFWETPDFTQTVMPAPVPDVLRATANQFINDYRRQVRTFEDEYEVAPGVVVKLTGGHTPGHSIVYVNSG GERLTFAGDALFPVAFEHPEWHNGFEHDPEESVRVRMRLMREAAASGEWFVATHLPFPSVGRVAVDGDAFRWIAAFWDY
Sequences:
>Translated_319_residues MSTYLNHSNQTNATDDRQASVTRQPFAPAQELVPSRYALQVGDIDVVVISDGVLPLPTSTMSTNADPQARAAWFKDMFLG PDAFDWALNVLVVRSGEQIILVDAGLGGQFPGFPRAGQLPKRLEAAGIDLASVTDIVITHMHMDHVGGLLVDEVKSRLRA DVRIHVSAKEVEFWETPDFTQTVMPAPVPDVLRATANQFINDYRRQVRTFEDEYEVAPGVVVKLTGGHTPGHSIVYVNSG GERLTFAGDALFPVAFEHPEWHNGFEHDPEESVRVRMRLMREAAASGEWFVATHLPFPSVGRVAVDGDAFRWIAAFWDY >Mature_318_residues STYLNHSNQTNATDDRQASVTRQPFAPAQELVPSRYALQVGDIDVVVISDGVLPLPTSTMSTNADPQARAAWFKDMFLGP DAFDWALNVLVVRSGEQIILVDAGLGGQFPGFPRAGQLPKRLEAAGIDLASVTDIVITHMHMDHVGGLLVDEVKSRLRAD VRIHVSAKEVEFWETPDFTQTVMPAPVPDVLRATANQFINDYRRQVRTFEDEYEVAPGVVVKLTGGHTPGHSIVYVNSGG ERLTFAGDALFPVAFEHPEWHNGFEHDPEESVRVRMRLMREAAASGEWFVATHLPFPSVGRVAVDGDAFRWIAAFWDY
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 35293; Mature: 35162
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTYLNHSNQTNATDDRQASVTRQPFAPAQELVPSRYALQVGDIDVVVISDGVLPLPTST CCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCEEEEECCEEEEEEECCCCCCCCCC MSTNADPQARAAWFKDMFLGPDAFDWALNVLVVRSGEQIILVDAGLGGQFPGFPRAGQLP CCCCCCCHHHHHHHHHHHCCCCHHHHEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCH KRLEAAGIDLASVTDIVITHMHMDHVGGLLVDEVKSRLRADVRIHVSAKEVEFWETPDFT HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHH QTVMPAPVPDVLRATANQFINDYRRQVRTFEDEYEVAPGVVVKLTGGHTPGHSIVYVNSG HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCCEEEEEECC GERLTFAGDALFPVAFEHPEWHNGFEHDPEESVRVRMRLMREAAASGEWFVATHLPFPSV CCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC GRVAVDGDAFRWIAAFWDY CEEEECCCHHHHHHHHHCC >Mature Secondary Structure STYLNHSNQTNATDDRQASVTRQPFAPAQELVPSRYALQVGDIDVVVISDGVLPLPTST CCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCEEEEECCEEEEEEECCCCCCCCCC MSTNADPQARAAWFKDMFLGPDAFDWALNVLVVRSGEQIILVDAGLGGQFPGFPRAGQLP CCCCCCCHHHHHHHHHHHCCCCHHHHEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCH KRLEAAGIDLASVTDIVITHMHMDHVGGLLVDEVKSRLRADVRIHVSAKEVEFWETPDFT HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHH QTVMPAPVPDVLRATANQFINDYRRQVRTFEDEYEVAPGVVVKLTGGHTPGHSIVYVNSG HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCCEEEEEECC GERLTFAGDALFPVAFEHPEWHNGFEHDPEESVRVRMRLMREAAASGEWFVATHLPFPSV CCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC GRVAVDGDAFRWIAAFWDY CEEEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]