| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is catJ [H]
Identifier: 77457495
GI number: 77457495
Start: 1441623
End: 1442402
Strand: Direct
Name: catJ [H]
Synonym: Pfl01_1268
Alternate gene names: 77457495
Gene position: 1441623-1442402 (Clockwise)
Preceding gene: 77457494
Following gene: 77457496
Centisome position: 22.39
GC content: 63.97
Gene sequence:
>780_bases ATGACTTACACCACCAATGAAATGATGACCGTTGCGGCGGCCCGTCGCCTGAAGAACGGCTCGGTGTGCTTCGTCGGCAT CGGCCTGCCGTCGAAAGCCGCCAACCTGGCGCGCCTGACCTCGTCGCCGGACGTGGTGCTGATCTACGAATCTGGCCCGA TCGGCGCCAAACCCAGCGTATTGCCTCTGTCGATCGGTGACGGCGAACTGGCGGAAACCGCTGACACCGTCGTGCCGACC GGTGAGATTTTTCGCTACTGGCTGCAGGGCGGGCGCATCGACGTCGGTTTCCTCGGCGCAGCCCAGGTCGACCGTTTCGG CAACATAAACACCACCGTGGTCGGCGACTATCATCAGCCGAAAGTACGCCTGCCGGGTGCCGGTGGCGCGCCGGAGATTG CCGGTTCCGCCAAAAGCGTGCTGATCATCCTTAAACAGTCGGCGCGTTCGTTTGTCGACAAACTCGATTTCATCACCTCG GTCGGCCATGGCGAGGGCGGCGATTCGCGCAAACGTCTGGGCCTGCCGGGTGCCGGCCCGGTCGGGATCATCACCGACCT GTGCATCATGGAGCCGGAAGAGGGCACCCACGAATTCGTGGTCACCGCACTGCACCCGGGCGTGACCCGTGAACAAGTGA TCGCTGCCACCGGTTGGGCCATCCGTTTTGCCGACAACGTTGACACCACCGCCGAACCGACCGAAGTCGAGCTGACCGCC CTGCGTGATCTCGAAGCCCGCACCGCAGCGGCCCACGGCCAGGCACCGGGAGAAGCATGA
Upstream 100 bases:
>100_bases ACCGTGAGACTTTTACCGCGTGGATCAACGAATACATCCATGGCTGCGCTGACTTCAGCGAGTTCCAGGCCAAGTTGGCC GCTGCTTCGGAGGCCAAGTA
Downstream 100 bases:
>100_bases TGCGCGACGTTTATATCTGCGATGCGATTCGTACCCCCATCGGTCGTTTTGGTGGCGGTCTGGCGGCGGTTCGCGCCGAC GACCTGGCCGCCGTGCCGAT
Product: coenzyme A transferase
Products: NA
Alternate protein names: 3-oxoadipate:succinyl-CoA transferase subunit B; Beta-ketoadipate:succinyl-CoA transferase subunit B [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPT GEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQPKVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITS VGHGEGGDSRKRLGLPGAGPVGIITDLCIMEPEEGTHEFVVTALHPGVTREQVIAATGWAIRFADNVDTTAEPTEVELTA LRDLEARTAAAHGQAPGEA
Sequences:
>Translated_259_residues MTYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPT GEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQPKVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITS VGHGEGGDSRKRLGLPGAGPVGIITDLCIMEPEEGTHEFVVTALHPGVTREQVIAATGWAIRFADNVDTTAEPTEVELTA LRDLEARTAAAHGQAPGEA >Mature_258_residues TYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPTG EIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQPKVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSV GHGEGGDSRKRLGLPGAGPVGIITDLCIMEPEEGTHEFVVTALHPGVTREQVIAATGWAIRFADNVDTTAEPTEVELTAL RDLEARTAAAHGQAPGEA
Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]
COG id: COG2057
COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]
Homologues:
None
Paralogues:
None
Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004165 [H]
Pfam domain/function: PF01144 CoA_trans [H]
EC number: =2.8.3.6 [H]
Molecular weight: Translated: 27074; Mature: 26943
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSV CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCE LPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQP EEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCCCCEEEEECCCCC KVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSVGHGEGGDSRKRLGLPGAGP EEECCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC VGIITDLCIMEPEEGTHEFVVTALHPGVTREQVIAATGWAIRFADNVDTTAEPTEVELTA HHHHHHHHEECCCCCCCEEEEEEECCCCCHHHEEEECCEEEEEECCCCCCCCCCEEEEEE LRDLEARTAAAHGQAPGEA HHCCHHHHHHHCCCCCCCC >Mature Secondary Structure TYTTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSV CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCE LPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQP EEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCCCCEEEEECCCCC KVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSVGHGEGGDSRKRLGLPGAGP EEECCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC VGIITDLCIMEPEEGTHEFVVTALHPGVTREQVIAATGWAIRFADNVDTTAEPTEVELTA HHHHHHHHEECCCCCCCEEEEEEECCCCCHHHEEEECCEEEEEECCCCCCCCCCEEEEEE LRDLEARTAAAHGQAPGEA HHCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11741863 [H]