Click here to switch to the map view.

The map label for this gene is alg44 [H]

Identifier: 77457185

GI number: 77457185

Start: 1116849

End: 1118018

Strand: Reverse

Name: alg44 [H]

Synonym: Pfl01_0958

Alternate gene names: 77457185

Gene position: 1118018-1116849 (Counterclockwise)

Preceding gene: 77457186

Following gene: 77457184

Centisome position: 17.36

GC content: 63.33

Gene sequence:

>1170_bases
ATGAATACCGCCGTCAACGTCAACGTAGTGCATGAATCCGAAGCCCAGCGTCAGCACGCCCGGGTCAAAATCCCGGCCAA
GCTGCGTTTCTTCGGCCCCGACCGGACTCCGGTTGAAGCGCGGGTCCTCGACCTGTCCGCCGGTGGTCTGGCGTTCAACG
CCGGACAACTGCCGCTGACCGTCGGCGAGGTGTACAAGGCGCGTCTGCAGTTCGTCATCGACAACCTCGGCCTGGCCATG
GACGTTGAACTGCAAGTGCGCTCCTACGACCGCCAGACGGGTCGTGCTGGCTGCCAGTTCCAGAACCTCGAGCCGCAGGA
CATTTCGACCCTGCGCCACCTGATCACTTCGCACCTGGCCGGCGACATCGTCAGCATCGGCGAAGTGCTGGCAACCCTGC
AGCGCGACAACTTCACCAAAGCGCGCAAGGTCAAGGACGGCGACTCCGGCATGACCCCGTTCGGGCGCCTGAAAGCCGTG
ACCTTCAGCGCCGGTATCTTCGCGGTCGGCCTGGTGGCGGCGGGTTTCATTTTCAAATCGGTGTACAGCATGTACTTCGT
CAGCCATGCGCAGGCCGGTCTGGTCAGCGTGCCGGGGATGAACATCACCATGCCGCGCGACGGTACCGTACAAAGCCTGG
TGAAGTCCGACGGCGTCGCCGCCAAAGGCGCTCCACTGGCAACGTTCAGTACCAGCATGCTCGACGTACTCAAAGGTCAC
CTGGAAGAAGATCAACTGTCTCCGGCCAAGGTTGAAGAACTGTTCGGCAAGCAAATGACCGGCACCCTGACCTCGCCGTG
CGATTGCACCGTGGCCCAGCAACTGGTGGCCGACGGTCAGTACGCGAGCAAGGGCGACGTGATCTTCCAGCTGGTGCCGC
GCAACACCCAGGCCACCGTCGATGCGCGCTTCTCCTATCGCCAGTTCGGCGACGTGCGTCCGGGCACCCCGGTGAGCTTC
CAGATCGCCGGCGAAGACAAGACCCGCACCGGCAAGATCGTCAGCAGCACCAGCCTGAAAAGCGCTGACCTGTCCTCCGA
CATCCGCGTGCAGATCCAGCCTGACGAGCCGCTGGACAGCCGCTTCGCCGGCCGCCCGGTGGAGGTGAACAGCGACCGCG
GTCCGAACCTGAACTGGCTGATCGACAAAGCCATGGCAGCCGGTCTTTAA

Upstream 100 bases:

>100_bases
CGTCTCGGACCATGACCTTCTCCGCCGGCAGCATTTTCGTCGCCGTGCTGCTGATGATGGTCTGACCTGCCCCTATTGAA
TTAACAAGGAAATCGCCCCC

Downstream 100 bases:

>100_bases
GTCGAGGACATGCCCGTGACGAGCCCTATCAGAATCCTGCCGGTCCCGCTGACCCTGGCCATGGCAATCGCCCTGGCCGG
TTGCGCCGGCCTGCCCGACC

Product: alginate biosynthesis protein Alg44

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNTAVNVNVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVLDLSAGGLAFNAGQLPLTVGEVYKARLQFVIDNLGLAM
DVELQVRSYDRQTGRAGCQFQNLEPQDISTLRHLITSHLAGDIVSIGEVLATLQRDNFTKARKVKDGDSGMTPFGRLKAV
TFSAGIFAVGLVAAGFIFKSVYSMYFVSHAQAGLVSVPGMNITMPRDGTVQSLVKSDGVAAKGAPLATFSTSMLDVLKGH
LEEDQLSPAKVEELFGKQMTGTLTSPCDCTVAQQLVADGQYASKGDVIFQLVPRNTQATVDARFSYRQFGDVRPGTPVSF
QIAGEDKTRTGKIVSSTSLKSADLSSDIRVQIQPDEPLDSRFAGRPVEVNSDRGPNLNWLIDKAMAAGL

Sequences:

>Translated_389_residues
MNTAVNVNVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVLDLSAGGLAFNAGQLPLTVGEVYKARLQFVIDNLGLAM
DVELQVRSYDRQTGRAGCQFQNLEPQDISTLRHLITSHLAGDIVSIGEVLATLQRDNFTKARKVKDGDSGMTPFGRLKAV
TFSAGIFAVGLVAAGFIFKSVYSMYFVSHAQAGLVSVPGMNITMPRDGTVQSLVKSDGVAAKGAPLATFSTSMLDVLKGH
LEEDQLSPAKVEELFGKQMTGTLTSPCDCTVAQQLVADGQYASKGDVIFQLVPRNTQATVDARFSYRQFGDVRPGTPVSF
QIAGEDKTRTGKIVSSTSLKSADLSSDIRVQIQPDEPLDSRFAGRPVEVNSDRGPNLNWLIDKAMAAGL
>Mature_389_residues
MNTAVNVNVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVLDLSAGGLAFNAGQLPLTVGEVYKARLQFVIDNLGLAM
DVELQVRSYDRQTGRAGCQFQNLEPQDISTLRHLITSHLAGDIVSIGEVLATLQRDNFTKARKVKDGDSGMTPFGRLKAV
TFSAGIFAVGLVAAGFIFKSVYSMYFVSHAQAGLVSVPGMNITMPRDGTVQSLVKSDGVAAKGAPLATFSTSMLDVLKGH
LEEDQLSPAKVEELFGKQMTGTLTSPCDCTVAQQLVADGQYASKGDVIFQLVPRNTQATVDARFSYRQFGDVRPGTPVSF
QIAGEDKTRTGKIVSSTSLKSADLSSDIRVQIQPDEPLDSRFAGRPVEVNSDRGPNLNWLIDKAMAAGL

Specific function: Required for alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875 [H]

Pfam domain/function: PF07238 PilZ [H]

EC number: NA

Molecular weight: Translated: 41946; Mature: 41946

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAVNVNVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVLDLSAGGLAFNAGQLPLT
CCCEEEEEEEECCHHHHHHCEEECCEEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE
VGEVYKARLQFVIDNLGLAMDVELQVRSYDRQTGRAGCQFQNLEPQDISTLRHLITSHLA
HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHH
GDIVSIGEVLATLQRDNFTKARKVKDGDSGMTPFGRLKAVTFSAGIFAVGLVAAGFIFKS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHEEEEEEHHHHHHHHHHHHHHHHHH
VYSMYFVSHAQAGLVSVPGMNITMPRDGTVQSLVKSDGVAAKGAPLATFSTSMLDVLKGH
HHHHHHHHHCCCCEEECCCCEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
LEEDQLSPAKVEELFGKQMTGTLTSPCDCTVAQQLVADGQYASKGDVIFQLVPRNTQATV
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEE
DARFSYRQFGDVRPGTPVSFQIAGEDKTRTGKIVSSTSLKSADLSSDIRVQIQPDEPLDS
EECCCHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCHHH
RFAGRPVEVNSDRGPNLNWLIDKAMAAGL
HHCCCCEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNTAVNVNVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVLDLSAGGLAFNAGQLPLT
CCCEEEEEEEECCHHHHHHCEEECCEEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE
VGEVYKARLQFVIDNLGLAMDVELQVRSYDRQTGRAGCQFQNLEPQDISTLRHLITSHLA
HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHH
GDIVSIGEVLATLQRDNFTKARKVKDGDSGMTPFGRLKAVTFSAGIFAVGLVAAGFIFKS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHEEEEEEHHHHHHHHHHHHHHHHHH
VYSMYFVSHAQAGLVSVPGMNITMPRDGTVQSLVKSDGVAAKGAPLATFSTSMLDVLKGH
HHHHHHHHHCCCCEEECCCCEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
LEEDQLSPAKVEELFGKQMTGTLTSPCDCTVAQQLVADGQYASKGDVIFQLVPRNTQATV
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEE
DARFSYRQFGDVRPGTPVSFQIAGEDKTRTGKIVSSTSLKSADLSSDIRVQIQPDEPLDS
EECCCHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCHHH
RFAGRPVEVNSDRGPNLNWLIDKAMAAGL
HHCCCCEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]