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The map label for this gene is sigK [H]

Identifier: 255961268

GI number: 255961268

Start: 4234730

End: 4235284

Strand: Direct

Name: sigK [H]

Synonym: Pfl01_3746

Alternate gene names: 255961268

Gene position: 4234730-4235284 (Clockwise)

Preceding gene: 77459967

Following gene: 77459969

Centisome position: 65.77

GC content: 63.96

Gene sequence:

>555_bases
ATGCTTGCTAGATTGCAGGACATGCCATTACCCGAAACCGCGTTCGATTACGAAGCCCGCCTCGCCGCCTGTGCCCGCGG
CGAGCGCGGGGCCCTGCGCGAATTGTATGTGCAGGAAAGCCCGCGGCTGCTCGGTGTGGCCCGGCGTCTGGTGCGAGACA
CGGCGCTGGCCGAAGACATCGTTCACGACGCATTCATCAAGATCTGGGCTGGCGCGTCGGGGTTCGATCCGGCGCGCGGT
TCGGCCCGGGGCTGGATGTTCAGCGTGACCCGCCATCTGGCGCTGAATGTGCTGCGCAATCACGACCGGGAAACGCCGTT
GAACGACAGCAACGAATCTCCGGCGATTGATGACGACTTCGATGCGCTGGCGCAATCGACCCGCATCCATCGCTGCCTGC
ATCAACTGGAACCGCAACGCCGCCGCTGCATCCTTCACGCCTACGTCGACGGTTACAGCCACGCACAGATCGCCCAACGC
CTCGACACGCCGCTGGGCACCGTCAAAGCCTGGATCAAGCGCAGCCTCAATGCGTTGCGGGAGTGCATGGGATGA

Upstream 100 bases:

>100_bases
CGAATGCACGGCAGCCAACAAGGGCAAACAGGAAGTGGTGAAGTACCAGGCCGACTACATTTTCTGGGCGGCGAACTGAG
CCTGACTGGACGTTTGGCCG

Downstream 100 bases:

>100_bases
CCACCGAATCGGCGCAGGAACGCGATGAACTGGCCAGCGAATACGTGCTCGGCACCCTCTCGGCCGAAGAACGCGCCGAA
GTGCAGCGGCGCTTGCCCAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MLARLQDMPLPETAFDYEARLAACARGERGALRELYVQESPRLLGVARRLVRDTALAEDIVHDAFIKIWAGASGFDPARG
SARGWMFSVTRHLALNVLRNHDRETPLNDSNESPAIDDDFDALAQSTRIHRCLHQLEPQRRRCILHAYVDGYSHAQIAQR
LDTPLGTVKAWIKRSLNALRECMG

Sequences:

>Translated_184_residues
MLARLQDMPLPETAFDYEARLAACARGERGALRELYVQESPRLLGVARRLVRDTALAEDIVHDAFIKIWAGASGFDPARG
SARGWMFSVTRHLALNVLRNHDRETPLNDSNESPAIDDDFDALAQSTRIHRCLHQLEPQRRRCILHAYVDGYSHAQIAQR
LDTPLGTVKAWIKRSLNALRECMG
>Mature_184_residues
MLARLQDMPLPETAFDYEARLAACARGERGALRELYVQESPRLLGVARRLVRDTALAEDIVHDAFIKIWAGASGFDPARG
SARGWMFSVTRHLALNVLRNHDRETPLNDSNESPAIDDDFDALAQSTRIHRCLHQLEPQRRRCILHAYVDGYSHAQIAQR
LDTPLGTVKAWIKRSLNALRECMG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20786; Mature: 20786

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARLQDMPLPETAFDYEARLAACARGERGALRELYVQESPRLLGVARRLVRDTALAEDI
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VHDAFIKIWAGASGFDPARGSARGWMFSVTRHLALNVLRNHDRETPLNDSNESPAIDDDF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
DALAQSTRIHRCLHQLEPQRRRCILHAYVDGYSHAQIAQRLDTPLGTVKAWIKRSLNALR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ECMG
HHHC
>Mature Secondary Structure
MLARLQDMPLPETAFDYEARLAACARGERGALRELYVQESPRLLGVARRLVRDTALAEDI
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VHDAFIKIWAGASGFDPARGSARGWMFSVTRHLALNVLRNHDRETPLNDSNESPAIDDDF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
DALAQSTRIHRCLHQLEPQRRRCILHAYVDGYSHAQIAQRLDTPLGTVKAWIKRSLNALR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ECMG
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA