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The map label for this gene is polA [H]

Identifier: 75674370

GI number: 75674370

Start: 197468

End: 198088

Strand: Direct

Name: polA [H]

Synonym: Nwi_0171

Alternate gene names: 75674370

Gene position: 197468-198088 (Clockwise)

Preceding gene: 75674369

Following gene: 75674371

Centisome position: 5.8

GC content: 65.22

Gene sequence:

>621_bases
ATGACCATCCGCCTGCACCGCGGCGACCTGCCGCATCAGGATCTTGCGCGCTACACCGGTTCGGCGGCGATCGATACCGA
GACCATGGGGCTCAAGCCGCACCGCGACCGGCTGTGCGTGGTGCAGATGTCGCCGGGCGACGGTTCGGCCGACGTGATCC
AGATCGCGCGCGGGCAGCGTGACGCGCCGAACCTGATCAAGCTTCTCAAAGACCCTGCCATCGTCAAGATCTTCCACTTC
GCGCGATTCGACCTCGCCGCGCTGTACAACGCATTCGGCGTGATGCCCCGGCCGGTCTACTGCACCAAGATCGCCTCGCG
GCTGATTCGCACCTACACCGATCGGCACGGCCTGAAGGATCTCGTGCGCGAACTGCTCAGCATCGACCTGTCGAAGCAGC
AGCAATCGAGCGACTGGGGATCGCCGACCCTGAGCGACGCGCAGCTGGCCTATGCCGCGTCCGATGTGCTGCATCTGCAC
GCCTTGCGCGATAAGCTCGAGGCCACCCTGGCGCGCGAGGATCGCTCAGCGCTCGCGCAGGCGTGTTTCGAGTTCCTGCC
GTCGCGGGCGATGCTCGATCTGGCCGGCTGGGAAACCGAAGACATCTTCGCGCACTCATAA

Upstream 100 bases:

>100_bases
CCCGAGGACATGCTTCGTTCGACAACGCTATAGTCATTCAACGATATTTCAGCCGCCAATCGATTCGACGAAACCAGGAC
ACCATGAAGGCCGAGACATA

Downstream 100 bases:

>100_bases
GCCACGAATCGCACCGATGATCGCCGCCTTGCGGCCGGTCGTTACACCTTTCGCCCCCTTTCGGTCACACTCCTCGTTCT
CGGTGGTGCCCGCTTTCGGG

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: POL I [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDPAIVKIFHF
ARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDLVRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLH
ALRDKLEATLAREDRSALAQACFEFLPSRAMLDLAGWETEDIFAHS

Sequences:

>Translated_206_residues
MTIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDPAIVKIFHF
ARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDLVRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLH
ALRDKLEATLAREDRSALAQACFEFLPSRAMLDLAGWETEDIFAHS
>Mature_205_residues
TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDPAIVKIFHFA
RFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDLVRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHA
LRDKLEATLAREDRSALAQACFEFLPSRAMLDLAGWETEDIFAHS

Specific function: Cleaves Multimeric tRNA Precursor At The Spacer Region. [C]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 3'-5' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=147, Percent_Identity=29.9319727891156, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR019760
- InterPro:   IPR001098
- InterPro:   IPR002298
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00476 DNA_pol_A [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 22997; Mature: 22865

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQR
CEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCC
DAPNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKD
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHH
LVRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQ
HHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACFEFLPSRAMLDLAGWETEDIFAHS
HHHHHCCCHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure 
TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQR
EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCC
DAPNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKD
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHH
LVRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQ
HHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACFEFLPSRAMLDLAGWETEDIFAHS
HHHHHCCCHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]