| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is 75674339
Identifier: 75674339
GI number: 75674339
Start: 164942
End: 166048
Strand: Direct
Name: 75674339
Synonym: Nwi_0140
Alternate gene names: NA
Gene position: 164942-166048 (Clockwise)
Preceding gene: 75674337
Following gene: 75674340
Centisome position: 4.85
GC content: 65.67
Gene sequence:
>1107_bases GTGTCATTCACGCTTCCGCGCGACGCCAACGGCATCCTGCCCGACCGCATGATCGCGGCGATGGCGGATGCGGGGCTGAT CCTCCCCGAATACCCGTTCGTCGAGAGTCAGATCCAGCCGGCAAGCCTTGATCTGCGGCTCGGCGCGACCGCCTATCGCG TGCGCGCCAGTTTTCTGCCGGGGCCGGACGCGACCGTCGCTGAACGCATCGACGAACTGAAGCTGCACGAAATCGACCTT TCCGACGGCGCGGTGCTGGAGACCAACTGCGTTTACATCGTGCCGTTGCTGGAGAGCCTGGCCCTTCCGCCCGAGATCGT CGCCGCCGCCAATCCAAAAAGCTCGACAGGCCGTCTCGACGTGTTCACACGCGTCATCGCCGACGGCACCCGGAGTTTCG ACATGATCGGCGCCGGCTATCATGGCCCGCTCTATGCCGAGATCAGTCCCAAGACGTTTCCGGTGTTGCTGCGCGAGGGC TCGCGGCTGTCGCAGGTCCGCTTCCGCTCGGGCGACGCCGTTCTCGACGCCGACGAACTCGACGCCCTGCATGCGAGCGA GCGGCTCGTCGATAGCGACGACACCGATTTCGTCAACGGCGTGGCGCTTAGCGTCGATCTCTCGGGCGCGCAGGCCCACG GCTTTGTCGGCTATCGCGCCAAGCGCCATACCGGCGTCATCGACATCGATCGCCGCGGCGGCTATGCGGTTGGCGAGTTC TGGGAGCCGATCGCGGCGCGTCCGGACGCCAGCCTGATCCTCGATCCCGGCGAGTTCTATATCCTCGCCTCGAAGGAAGC GGTGCAGGTGCCTCCGGACTATGCCGCGGAAATGGTGCCGTTCGATCCTCTGGTCGGCGAATTCCGTGTGCATTATGCGG GCTTCTTCGATCCCGGCTTCGGCTATGCCGGCGCCGGTGGGGAGGGGTCGCGCGCGGTGCTGGAAGTGCGCTCGCGCGAG GTGCCGTTCATTCTCGAGCATGGCCAGATCGTCGGCCGCCTGGTCTATGAGAAGATGCTGGCGCGGCCCGACGCGATGTA CGGCCAGCGCATCGGCTCCAACTACCAGGCCCAGGGCCTCAAGCTGTCGAAGCATTTTCGGCTGTAG
Upstream 100 bases:
>100_bases CGTCAAGCCGATCGATTGACATTCGCGTTGCGCCTGTCGGGATTACCGGTAAAAGTGCCTGTCCTCGGGTCGATATCGCT CACCCCGCAAGGACGACATC
Downstream 100 bases:
>100_bases GATCGTCAAGGTCTGCTGTTGATTCCGTCAGAGACGGAAGACTCCAGGTTTTTTGACGCGTTTTCTTCACGCGAACCAAT TCCATCCTCGGGTCAAGCCC
Product: 2'-deoxycytidine 5'-triphosphate deaminase
Products: dUTP; NH3
Alternate protein names: 2-Deoxycytidine 5-Triphosphate Deaminase; 2-Deoxycytidine 5'-Triphosphate Deaminase Superfamily; 2`-Deoxycytidine 5`-Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MSFTLPRDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGATAYRVRASFLPGPDATVAERIDELKLHEIDL SDGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLDVFTRVIADGTRSFDMIGAGYHGPLYAEISPKTFPVLLREG SRLSQVRFRSGDAVLDADELDALHASERLVDSDDTDFVNGVALSVDLSGAQAHGFVGYRAKRHTGVIDIDRRGGYAVGEF WEPIAARPDASLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGYAGAGGEGSRAVLEVRSRE VPFILEHGQIVGRLVYEKMLARPDAMYGQRIGSNYQAQGLKLSKHFRL
Sequences:
>Translated_368_residues MSFTLPRDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGATAYRVRASFLPGPDATVAERIDELKLHEIDL SDGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLDVFTRVIADGTRSFDMIGAGYHGPLYAEISPKTFPVLLREG SRLSQVRFRSGDAVLDADELDALHASERLVDSDDTDFVNGVALSVDLSGAQAHGFVGYRAKRHTGVIDIDRRGGYAVGEF WEPIAARPDASLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGYAGAGGEGSRAVLEVRSRE VPFILEHGQIVGRLVYEKMLARPDAMYGQRIGSNYQAQGLKLSKHFRL >Mature_367_residues SFTLPRDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGATAYRVRASFLPGPDATVAERIDELKLHEIDLS DGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLDVFTRVIADGTRSFDMIGAGYHGPLYAEISPKTFPVLLREGS RLSQVRFRSGDAVLDADELDALHASERLVDSDDTDFVNGVALSVDLSGAQAHGFVGYRAKRHTGVIDIDRRGGYAVGEFW EPIAARPDASLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGYAGAGGEGSRAVLEVRSREV PFILEHGQIVGRLVYEKMLARPDAMYGQRIGSNYQAQGLKLSKHFRL
Specific function: Unknown
COG id: COG0717
COG function: function code F; Deoxycytidine deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.4.13
Molecular weight: Translated: 40010; Mature: 39879
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFTLPRDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGATAYRVRASFLP CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCC GPDATVAERIDELKLHEIDLSDGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLD CCCCHHHHHHHHCEEEEEECCCCCEEECCCEEEEEHHHHHCCCHHHEEECCCCCCCCHHH VFTRVIADGTRSFDMIGAGYHGPLYAEISPKTFPVLLREGSRLSQVRFRSGDAVLDADEL HHHHHHHCCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCHHEEEECCCCEEECHHHH DALHASERLVDSDDTDFVNGVALSVDLSGAQAHGFVGYRAKRHTGVIDIDRRGGYAVGEF HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEHHHH WEPIAARPDASLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGF HHHHHCCCCCEEEECCCCEEEEECCCCEECCCCHHHHCCCCCCCCCCEEEEEEEEECCCC GYAGAGGEGSRAVLEVRSREVPFILEHGQIVGRLVYEKMLARPDAMYGQRIGSNYQAQGL CCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE KLSKHFRL EECCCCCC >Mature Secondary Structure SFTLPRDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGATAYRVRASFLP CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCC GPDATVAERIDELKLHEIDLSDGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLD CCCCHHHHHHHHCEEEEEECCCCCEEECCCEEEEEHHHHHCCCHHHEEECCCCCCCCHHH VFTRVIADGTRSFDMIGAGYHGPLYAEISPKTFPVLLREGSRLSQVRFRSGDAVLDADEL HHHHHHHCCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCHHEEEECCCCEEECHHHH DALHASERLVDSDDTDFVNGVALSVDLSGAQAHGFVGYRAKRHTGVIDIDRRGGYAVGEF HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEHHHH WEPIAARPDASLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGF HHHHHCCCCCEEEECCCCEEEEECCCCEECCCCHHHHCCCCCCCCCCEEEEEEEEECCCC GYAGAGGEGSRAVLEVRSREVPFILEHGQIVGRLVYEKMLARPDAMYGQRIGSNYQAQGL CCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE KLSKHFRL EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dCTP; H2O
Specific reaction: dCTP + H2O = dUTP + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA