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The map label for this gene is ltrA [H]

Identifier: 73539316

GI number: 73539316

Start: 2290969

End: 2291907

Strand: Reverse

Name: ltrA [H]

Synonym: Reut_B5494

Alternate gene names: 73539316

Gene position: 2291907-2290969 (Counterclockwise)

Preceding gene: 73539317

Following gene: 73539315

Centisome position: 84.07

GC content: 66.03

Gene sequence:

>939_bases
ATGGATCTCAACGCCCTGCGCCTGTTCGTCGACATCGTCGATGCCGGCAACCTCAGCGCCGCCGCGCGCAAGCTCAAGAT
GACGCGGGCCAACGTCAGCTATCACCTGAAGGCGCTCGAGGAAGAACTTGGCGTGCAACTGCTGCGCCGGACCACGCGCC
ACGTGGAGCCCACGCCCGTGGGTGCCGGGCTGTATGAACACGGGCGCAACATCCTCGGCGAGGTGGCAGCGGCCAACGCG
CTGATCAGCAATATGGGCAAGAGCCTGCAGGGCCATGTGCGGCTGTCCGTGCCGACAGGCCTCGGCCACACCATGCTGTC
GCCGCTGCTGGTGCAGTTCAAGCAGCGCTATCCCGACATCCTGCTCGACGTGGTGTTCGACAACCGCGTGCACAACCTCG
TGTCCGAAGACGTCGACGTCGCGCTGCGCATCATCTCTACGCCGCCCGACTCGGTGGTCGCCACCGAGATCGGCGAAGTC
GACTGGGTTGTGTGCGCCGCACCGGCCTATCTTGCGGCACACCCGGCGCCCACCGTACTCGCGGAACTGGACGGGCATGC
CGTAGTGTGCGCATCTCCGGTGGGCCAGAAGCTCAAGGTGTCGGGCTTGCCGCCGCATGGCGTCGGCGCACGCGAACAGA
TCGTGCTGGAACCCACGCTTAGCTCCGACAATTTCGGGTTCTTGAAGGAGGCCGTGCTCGCGGGGCTGGGCATCGGCATC
TTCCCGATCTACGCGATCGGCACGGAACTCGCCAACGGCACGCTGGCATCGCTGCTGGATGGCTACCACGTCAGCGTGTT
CGGCAGCCGGCTCTATATGCTGACCATGCCCAACCGTTACCAGACGCTCGCCACGCGCTGCCTGCTGACCTTCCTGAAGA
CCGAACTGCAGGCCGTGTGGCCGCGGCTGCACGGCACGCCGGCCCAGCGCCAGTCCTGA

Upstream 100 bases:

>100_bases
CCCGGCGAGGGGGTGCTGGCGGCGGCGCGTGGCAATATACGGGGGCGGACGCTGCCGGCGGCAGCCCGCGCCCTGAACCG
CCTGCCCCTTTTGCTCACCC

Downstream 100 bases:

>100_bases
CACCACCGTCTATAGTAGGAACACAAGGAAAACCCTTGATCCCGGCCGGTGCCCGGGGGGTGCCGGCCCCTGCATCCAGA
GGAGCAACCATGGCCCTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPVGAGLYEHGRNILGEVAAANA
LISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDILLDVVFDNRVHNLVSEDVDVALRIISTPPDSVVATEIGEV
DWVVCAAPAYLAAHPAPTVLAELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIGI
FPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQAVWPRLHGTPAQRQS

Sequences:

>Translated_312_residues
MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPVGAGLYEHGRNILGEVAAANA
LISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDILLDVVFDNRVHNLVSEDVDVALRIISTPPDSVVATEIGEV
DWVVCAAPAYLAAHPAPTVLAELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIGI
FPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQAVWPRLHGTPAQRQS
>Mature_312_residues
MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPVGAGLYEHGRNILGEVAAANA
LISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDILLDVVFDNRVHNLVSEDVDVALRIISTPPDSVVATEIGEV
DWVVCAAPAYLAAHPAPTVLAELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIGI
FPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQAVWPRLHGTPAQRQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=265, Percent_Identity=31.3207547169811, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786401, Length=255, Percent_Identity=30.5882352941176, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=26.6211604095563, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=27.5167785234899, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789639, Length=261, Percent_Identity=26.4367816091954, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081978, Length=278, Percent_Identity=28.7769784172662, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787589, Length=278, Percent_Identity=24.8201438848921, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788297, Length=123, Percent_Identity=36.5853658536585, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786713, Length=266, Percent_Identity=27.0676691729323, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786508, Length=259, Percent_Identity=24.3243243243243, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790011, Length=280, Percent_Identity=26.0714285714286, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=274, Percent_Identity=23.3576642335766, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=25.6, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI2367136, Length=199, Percent_Identity=25.6281407035176, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788706, Length=286, Percent_Identity=24.4755244755245, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33628; Mature: 33628

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV
CCHHHHEHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GAGLYEHGRNILGEVAAANALISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCHHH
LLDVVFDNRVHNLVSEDVDVALRIISTPPDSVVATEIGEVDWVVCAAPAYLAAHPAPTVL
HHHHHHHHHHHHHHHHCHHEEEEEECCCCCCHHHHHCCCCCEEEECCCHHHHCCCCCHHE
AELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIGI
EECCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCHHH
FPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQAVW
HHHHHHHHHHCCCHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
PRLHGTPAQRQS
HHHCCCCCCCCC
>Mature Secondary Structure
MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV
CCHHHHEHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GAGLYEHGRNILGEVAAANALISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCHHH
LLDVVFDNRVHNLVSEDVDVALRIISTPPDSVVATEIGEVDWVVCAAPAYLAAHPAPTVL
HHHHHHHHHHHHHHHHCHHEEEEEECCCCCCHHHHHCCCCCEEEECCCHHHHCCCCCHHE
AELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIGI
EECCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCHHH
FPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQAVW
HHHHHHHHHHCCCHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
PRLHGTPAQRQS
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]