| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is phoD [H]
Identifier: 73539311
GI number: 73539311
Start: 2285422
End: 2287434
Strand: Reverse
Name: phoD [H]
Synonym: Reut_B5489
Alternate gene names: 73539311
Gene position: 2287434-2285422 (Counterclockwise)
Preceding gene: 73539315
Following gene: 73539309
Centisome position: 83.91
GC content: 64.13
Gene sequence:
>2013_bases ATGGACCGTCGCCAGTTCCTCAAGTGGGGGAGTTTCATGACTGTCTCGGTGGCAACCGGCGGGCTCGCCGGATGCGGTGG AGGTGGAGATTCCGATGGGGGGCCTACCGATACCGGCAACCCCGAGAACTTCAATTTCCTGCATGGCGTCGCCTCGGGCG ATCCGAAGCCCGACAGCGTCATCGTATGGACGCGCGTCGAGGGCAGCAACGGGCAACGCCCCGTGGAAGTGCGGCTGCAG GTATCGACCCAACAGGACTTCGGCACGCTGCTGGTCAACCAGCGCCTGTCCGCATTGCCCGACTGGGACTACACGCTGCG CAACAAGGTGACGGGCCTTGCCGCAGCGACGCAGTACTACTACCGCTTCCTGCTCGGCGATCGGCCCAGCATGACCGGCC GGACACGCACCGCCGCCGCCGCCGGTACGCCGCTGTCGCAACTGCGCTTTGCCTTTGTCTCGTGCCAGAACTGGAACGTC AACCACTGGGCCGGCATGGAAGAGCTTGCCAACCAGGACCTGGAGTTCATTGTCCATGTCGGCGACTACATCTATGAAGC CGTACCGGGCGGCTCGCGCAATGGCAACGTGGAAGACCGGCACGGGGTACTGCAGCTTCCCAATGGCACCGGACTGCCGG ACGGTTCCGTCTACGCGACCACGCTGGCCGATTACCGCTACCTGTACCGGAGCTACCGCAGCGACACGCGCCTGCAGGCG CTGCATGCCGCCTTCCCGATGATCGCGATCTGGGACGACCACGAGTTTTCCGACAACTGCTGGCAAGACCGCCAGACCTA CAGCCCCAACGACGACATGACACCGCGCACGGCGCGGCGGCGCAGCGCCAATCAGGCGTGGTTCGAATTCCTCCCGGCTG ATGTCACGATCGACCTCAACAATCCGTCGTTCCAGAACATACAGATCTACCGCTCCTTCACGTTCGGCAACCTCGCCACG CTGCTGATGACCGACGAGCGGCTGTACCGGGCCGACCACATCATTCCGGAGTCGTCGACTGGCGGCAACGTGGGCAGCAG ACAGTTCGTTCCGGCCGGCAGACTTGCCTCAGCCGAAGCCGACAAGATGGCAGCCGCTGGCAATGCACTGACGCCGGTGT CCATGCTCGGTGACACGCAGCGCGCGTGGTGGCAGGACCGCGTGGGCGGCGCCAATACCACGTGGAAGCTGTGGGGCAAC GAGCTTGCGATGCTGCGCATGCAAATCGACATGCCACAGGCGCTGGCCGACCTCATCTCCAGAGCGCTTGCGCAGGTCAA CGGCGTACTCGCCCCGATCGTCGCCGACATGACGACCGCTCTCGCGAGCGACCTGCGCGGCGCGAGCGCGGCGGGGACTT ACGTGGGACTCACCTACACCGCACTGCGCAACGTGGTGTCACGCGTCGGGATCAGCAGCGCGACCTTCGACGCGAATATC AAGCCGTTCATCGACAGCCGCCTGCCCCCGATCTGGCTGCTCGACCGCATCATCCTCAACGCGGACCAGTGGGACGGCTA CAATGCCGAGCGCAAGAACCTGATGGCGTTCCTGAAGACCCACGGCATCAAGAACGTGGTGACACTGAGCGGCGATATCC ATGCCTTCTTTGCGGGCCAGGTCATGGATGACTACGACGCCGCCACGCCGGCTCCTGTGATGGTGGACCTCGTGACGGCC GGGCTGTCGAGCAATTCGCTCCTTAGCGGACTGCGCCAAAGAATCGAGAACGACCAGACGTTCACCGCGGTGCGCGATCT CATCTTCAGCAACGTCGGCGGCACGCTGGTGAACACGCTGGATACCACGCTGCGCACGTTCAATCCCTGGCTGCGCCATG CCGAAACCAACGTCGAAGGCTATGCCCTGGTGACGCTGACACCCGACAAGCTCAGTTGCGCGTTCCACGTGATGAAGGAA CTCCAGGGCACCACGGCACCGGCGCAGCCAGCCACGGCGAGCGTGAAGGTCTTTGAAGTGGCGTCAGGCGCCGTCGACGT TACCGCCGTGTAG
Upstream 100 bases:
>100_bases CTCCTATAGCGATGTCGGCAATGCACCGACAGCGACCGCGTTTCCCGGCACCTAGTATCCAGATGCCACCGCTTGCGGGA CCACAACAAGGAGAAGCACC
Downstream 100 bases:
>100_bases AGCAGCTTCGGCGCGACCGCATTCATTCAGGCGTCAGTGCTGCCGCCGCGCCCGGCTGCCGGCGCTTCCAGGCTGCGCTC CAGCAGCGTCAGATCATCCC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: APaseD [H]
Number of amino acids: Translated: 670; Mature: 670
Protein sequence:
>670_residues MDRRQFLKWGSFMTVSVATGGLAGCGGGGDSDGGPTDTGNPENFNFLHGVASGDPKPDSVIVWTRVEGSNGQRPVEVRLQ VSTQQDFGTLLVNQRLSALPDWDYTLRNKVTGLAAATQYYYRFLLGDRPSMTGRTRTAAAAGTPLSQLRFAFVSCQNWNV NHWAGMEELANQDLEFIVHVGDYIYEAVPGGSRNGNVEDRHGVLQLPNGTGLPDGSVYATTLADYRYLYRSYRSDTRLQA LHAAFPMIAIWDDHEFSDNCWQDRQTYSPNDDMTPRTARRRSANQAWFEFLPADVTIDLNNPSFQNIQIYRSFTFGNLAT LLMTDERLYRADHIIPESSTGGNVGSRQFVPAGRLASAEADKMAAAGNALTPVSMLGDTQRAWWQDRVGGANTTWKLWGN ELAMLRMQIDMPQALADLISRALAQVNGVLAPIVADMTTALASDLRGASAAGTYVGLTYTALRNVVSRVGISSATFDANI KPFIDSRLPPIWLLDRIILNADQWDGYNAERKNLMAFLKTHGIKNVVTLSGDIHAFFAGQVMDDYDAATPAPVMVDLVTA GLSSNSLLSGLRQRIENDQTFTAVRDLIFSNVGGTLVNTLDTTLRTFNPWLRHAETNVEGYALVTLTPDKLSCAFHVMKE LQGTTAPAQPATASVKVFEVASGAVDVTAV
Sequences:
>Translated_670_residues MDRRQFLKWGSFMTVSVATGGLAGCGGGGDSDGGPTDTGNPENFNFLHGVASGDPKPDSVIVWTRVEGSNGQRPVEVRLQ VSTQQDFGTLLVNQRLSALPDWDYTLRNKVTGLAAATQYYYRFLLGDRPSMTGRTRTAAAAGTPLSQLRFAFVSCQNWNV NHWAGMEELANQDLEFIVHVGDYIYEAVPGGSRNGNVEDRHGVLQLPNGTGLPDGSVYATTLADYRYLYRSYRSDTRLQA LHAAFPMIAIWDDHEFSDNCWQDRQTYSPNDDMTPRTARRRSANQAWFEFLPADVTIDLNNPSFQNIQIYRSFTFGNLAT LLMTDERLYRADHIIPESSTGGNVGSRQFVPAGRLASAEADKMAAAGNALTPVSMLGDTQRAWWQDRVGGANTTWKLWGN ELAMLRMQIDMPQALADLISRALAQVNGVLAPIVADMTTALASDLRGASAAGTYVGLTYTALRNVVSRVGISSATFDANI KPFIDSRLPPIWLLDRIILNADQWDGYNAERKNLMAFLKTHGIKNVVTLSGDIHAFFAGQVMDDYDAATPAPVMVDLVTA GLSSNSLLSGLRQRIENDQTFTAVRDLIFSNVGGTLVNTLDTTLRTFNPWLRHAETNVEGYALVTLTPDKLSCAFHVMKE LQGTTAPAQPATASVKVFEVASGAVDVTAV >Mature_670_residues MDRRQFLKWGSFMTVSVATGGLAGCGGGGDSDGGPTDTGNPENFNFLHGVASGDPKPDSVIVWTRVEGSNGQRPVEVRLQ VSTQQDFGTLLVNQRLSALPDWDYTLRNKVTGLAAATQYYYRFLLGDRPSMTGRTRTAAAAGTPLSQLRFAFVSCQNWNV NHWAGMEELANQDLEFIVHVGDYIYEAVPGGSRNGNVEDRHGVLQLPNGTGLPDGSVYATTLADYRYLYRSYRSDTRLQA LHAAFPMIAIWDDHEFSDNCWQDRQTYSPNDDMTPRTARRRSANQAWFEFLPADVTIDLNNPSFQNIQIYRSFTFGNLAT LLMTDERLYRADHIIPESSTGGNVGSRQFVPAGRLASAEADKMAAAGNALTPVSMLGDTQRAWWQDRVGGANTTWKLWGN ELAMLRMQIDMPQALADLISRALAQVNGVLAPIVADMTTALASDLRGASAAGTYVGLTYTALRNVVSRVGISSATFDANI KPFIDSRLPPIWLLDRIILNADQWDGYNAERKNLMAFLKTHGIKNVVTLSGDIHAFFAGQVMDDYDAATPAPVMVDLVTA GLSSNSLLSGLRQRIENDQTFTAVRDLIFSNVGGTLVNTLDTTLRTFNPWLRHAETNVEGYALVTLTPDKLSCAFHVMKE LQGTTAPAQPATASVKVFEVASGAVDVTAV
Specific function: Unknown
COG id: COG3540
COG function: function code P; Phosphodiesterase/alkaline phosphatase D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PhoD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018946 - InterPro: IPR006311 [H]
Pfam domain/function: PF09423 PhoD [H]
EC number: =3.1.3.1 [H]
Molecular weight: Translated: 73237; Mature: 73237
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRRQFLKWGSFMTVSVATGGLAGCGGGGDSDGGPTDTGNPENFNFLHGVASGDPKPDSV CCHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCE IVWTRVEGSNGQRPVEVRLQVSTQQDFGTLLVNQRLSALPDWDYTLRNKVTGLAAATQYY EEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH YRFLLGDRPSMTGRTRTAAAAGTPLSQLRFAFVSCQNWNVNHWAGMEELANQDLEFIVHV HHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHEEECCCCCHHHCCHHHHCCCCCEEEEHH GDYIYEAVPGGSRNGNVEDRHGVLQLPNGTGLPDGSVYATTLADYRYLYRSYRSDTRLQA HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHH LHAAFPMIAIWDDHEFSDNCWQDRQTYSPNDDMTPRTARRRSANQAWFEFLPADVTIDLN HHHHCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCEEEECC NPSFQNIQIYRSFTFGNLATLLMTDERLYRADHIIPESSTGGNVGSRQFVPAGRLASAEA CCCCCEEEEEEEECCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH DKMAAAGNALTPVSMLGDTQRAWWQDRVGGANTTWKLWGNELAMLRMQIDMPQALADLIS HHHHHCCCCCCCHHHHCCCHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCHHHHHHHHH RALAQVNGVLAPIVADMTTALASDLRGASAAGTYVGLTYTALRNVVSRVGISSATFDANI HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCC KPFIDSRLPPIWLLDRIILNADQWDGYNAERKNLMAFLKTHGIKNVVTLSGDIHAFFAGQ CHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEECC VMDDYDAATPAPVMVDLVTAGLSSNSLLSGLRQRIENDQTFTAVRDLIFSNVGGTLVNTL HHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH DTTLRTFNPWLRHAETNVEGYALVTLTPDKLSCAFHVMKELQGTTAPAQPATASVKVFEV HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE ASGAVDVTAV CCCCEEEEEC >Mature Secondary Structure MDRRQFLKWGSFMTVSVATGGLAGCGGGGDSDGGPTDTGNPENFNFLHGVASGDPKPDSV CCHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCE IVWTRVEGSNGQRPVEVRLQVSTQQDFGTLLVNQRLSALPDWDYTLRNKVTGLAAATQYY EEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH YRFLLGDRPSMTGRTRTAAAAGTPLSQLRFAFVSCQNWNVNHWAGMEELANQDLEFIVHV HHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHEEECCCCCHHHCCHHHHCCCCCEEEEHH GDYIYEAVPGGSRNGNVEDRHGVLQLPNGTGLPDGSVYATTLADYRYLYRSYRSDTRLQA HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHH LHAAFPMIAIWDDHEFSDNCWQDRQTYSPNDDMTPRTARRRSANQAWFEFLPADVTIDLN HHHHCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCEEEECC NPSFQNIQIYRSFTFGNLATLLMTDERLYRADHIIPESSTGGNVGSRQFVPAGRLASAEA CCCCCEEEEEEEECCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH DKMAAAGNALTPVSMLGDTQRAWWQDRVGGANTTWKLWGNELAMLRMQIDMPQALADLIS HHHHHCCCCCCCHHHHCCCHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCHHHHHHHHH RALAQVNGVLAPIVADMTTALASDLRGASAAGTYVGLTYTALRNVVSRVGISSATFDANI HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCC KPFIDSRLPPIWLLDRIILNADQWDGYNAERKNLMAFLKTHGIKNVVTLSGDIHAFFAGQ CHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEECC VMDDYDAATPAPVMVDLVTAGLSSNSLLSGLRQRIENDQTFTAVRDLIFSNVGGTLVNTL HHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH DTTLRTFNPWLRHAETNVEGYALVTLTPDKLSCAFHVMKELQGTTAPAQPATASVKVFEV HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE ASGAVDVTAV CCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760916; 9384377; 7704254; 25878 [H]