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The map label for this gene is rbcR [H]

Identifier: 73539265

GI number: 73539265

Start: 2234116

End: 2235042

Strand: Direct

Name: rbcR [H]

Synonym: Reut_B5443

Alternate gene names: 73539265

Gene position: 2234116-2235042 (Clockwise)

Preceding gene: 73539261

Following gene: 73539271

Centisome position: 81.95

GC content: 64.4

Gene sequence:

>927_bases
ATGCAAAAGCTGATGCATTGCAGCATCATGGATCTGAGGCTTCTCGTTGCCGTGGCCGACGCGGGGAACATGTCGAAAGG
CGGCGCCGTCTGCTTTCTCGCGCCATCGACCGCGAGCCTGCGCATCAAGCATCTGGAGGCGATCGTGGGCACGCGGCTGT
TCCGGCGCGAGGCGCGCGGCGTGTCCCTGACCCGGGCGGGACAGATCATGGTGGACCACAGCCGGCGCTGCCTGACCGAG
ATCGAGCAGATGCAGGCAAGCCTGACCCCATTCTCGGAAGACGTGCATGCGCAGCTGGTTCTCTATGCCAACAGCAGCGC
CATTGCATCGTTCCTGCCCGGCGACCTGCAGGGCTTCCTGCAGTCCCATCCGAAGGCAAGAATCACGCTGGAAGAACACC
TGAGCCGCGACGTGCTGGTCGCCGTCGTGGAAGGGCGCGCGGATATCGGCATCCTGACCAAGGACGAGCCGCACCCGGAC
CTGGTTTACTTCCCGTACCACGAAGACGAAATCGTCCTGCTCCTGGCGGAAACGCAGCCGTGGACCAAAACCGAGCCCGT
CGCATTCCTGGACTGCCTGTCCTTCCCCTTCGTCAGCCAGCAGAACGGCTCCGCTATTCACTCCTTCCTGCTAGCCAAGG
CCAGCGAGCAGGGCAGACGCGTCGACGTGCGGATCCAGGTAGCCGGATTCGCCGCGGTGGCCTCCATGGTGCGATCGGGA
GTCGGGGTAGCGATCGTGCCGCGCTCGGCCCTGGCGGCGATCAATGTGGAAGGCCTGCGCGTCGTGGCGCTCAGCGACGC
CTGGGCCAGGCGGACGCTCAGCCTGTGTGTGCGGCGAGATGTGCTGGGATCGAGAAACTATGTCACCGCTCTTGTAGATG
TCCTGAGGCAAAGCGGCGATCAAGCCGGGGTGGCTGATTCCGCCTGA

Upstream 100 bases:

>100_bases
TTGTGTTTTGCAAAGGCTCGAGCAGAATGGCGCCTGAGCGAACTTTGGCGTTATCACGGGGTTCTGACAAACGAGTTGTT
CCAATACCAGGGTTTGAGAA

Downstream 100 bases:

>100_bases
AGGTGTTCCCACATGGCATGCGCGTTGTGCATCGCCGAGCAAAGTTCGGAACCGCGGCCCACGCGCTTTTGCCCTTTTGT
CGCTAGGACAAAAGGAGGTC

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQKLMHCSIMDLRLLVAVADAGNMSKGGAVCFLAPSTASLRIKHLEAIVGTRLFRREARGVSLTRAGQIMVDHSRRCLTE
IEQMQASLTPFSEDVHAQLVLYANSSAIASFLPGDLQGFLQSHPKARITLEEHLSRDVLVAVVEGRADIGILTKDEPHPD
LVYFPYHEDEIVLLLAETQPWTKTEPVAFLDCLSFPFVSQQNGSAIHSFLLAKASEQGRRVDVRIQVAGFAAVASMVRSG
VGVAIVPRSALAAINVEGLRVVALSDAWARRTLSLCVRRDVLGSRNYVTALVDVLRQSGDQAGVADSA

Sequences:

>Translated_308_residues
MQKLMHCSIMDLRLLVAVADAGNMSKGGAVCFLAPSTASLRIKHLEAIVGTRLFRREARGVSLTRAGQIMVDHSRRCLTE
IEQMQASLTPFSEDVHAQLVLYANSSAIASFLPGDLQGFLQSHPKARITLEEHLSRDVLVAVVEGRADIGILTKDEPHPD
LVYFPYHEDEIVLLLAETQPWTKTEPVAFLDCLSFPFVSQQNGSAIHSFLLAKASEQGRRVDVRIQVAGFAAVASMVRSG
VGVAIVPRSALAAINVEGLRVVALSDAWARRTLSLCVRRDVLGSRNYVTALVDVLRQSGDQAGVADSA
>Mature_308_residues
MQKLMHCSIMDLRLLVAVADAGNMSKGGAVCFLAPSTASLRIKHLEAIVGTRLFRREARGVSLTRAGQIMVDHSRRCLTE
IEQMQASLTPFSEDVHAQLVLYANSSAIASFLPGDLQGFLQSHPKARITLEEHLSRDVLVAVVEGRADIGILTKDEPHPD
LVYFPYHEDEIVLLLAETQPWTKTEPVAFLDCLSFPFVSQQNGSAIHSFLLAKASEQGRRVDVRIQVAGFAAVASMVRSG
VGVAIVPRSALAAINVEGLRVVALSDAWARRTLSLCVRRDVLGSRNYVTALVDVLRQSGDQAGVADSA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=23.5294117647059, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=27.9835390946502, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788481, Length=247, Percent_Identity=23.8866396761134, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=18.2142857142857, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788296, Length=277, Percent_Identity=22.7436823104693, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=23.2394366197183, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=23.6486486486486, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33423; Mature: 33423

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLMHCSIMDLRLLVAVADAGNMSKGGAVCFLAPSTASLRIKHLEAIVGTRLFRREARG
CCCCHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
VSLTRAGQIMVDHSRRCLTEIEQMQASLTPFSEDVHAQLVLYANSSAIASFLPGDLQGFL
CEEEECCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHCCHHHHHHH
QSHPKARITLEEHLSRDVLVAVVEGRADIGILTKDEPHPDLVYFPYHEDEIVLLLAETQP
HCCCCEEEEHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCC
WTKTEPVAFLDCLSFPFVSQQNGSAIHSFLLAKASEQGRRVDVRIQVAGFAAVASMVRSG
CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCC
VGVAIVPRSALAAINVEGLRVVALSDAWARRTLSLCVRRDVLGSRNYVTALVDVLRQSGD
CCEEEECCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
QAGVADSA
CCCCCCCC
>Mature Secondary Structure
MQKLMHCSIMDLRLLVAVADAGNMSKGGAVCFLAPSTASLRIKHLEAIVGTRLFRREARG
CCCCHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
VSLTRAGQIMVDHSRRCLTEIEQMQASLTPFSEDVHAQLVLYANSSAIASFLPGDLQGFL
CEEEECCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHCCHHHHHHH
QSHPKARITLEEHLSRDVLVAVVEGRADIGILTKDEPHPDLVYFPYHEDEIVLLLAETQP
HCCCCEEEEHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCC
WTKTEPVAFLDCLSFPFVSQQNGSAIHSFLLAKASEQGRRVDVRIQVAGFAAVASMVRSG
CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCC
VGVAIVPRSALAAINVEGLRVVALSDAWARRTLSLCVRRDVLGSRNYVTALVDVLRQSGD
CCEEEECCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
QAGVADSA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]