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The map label for this gene is yfdE [H]

Identifier: 73539261

GI number: 73539261

Start: 2230242

End: 2231372

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B5439

Alternate gene names: 73539261

Gene position: 2230242-2231372 (Clockwise)

Preceding gene: 73539260

Following gene: 73539265

Centisome position: 81.81

GC content: 66.05

Gene sequence:

>1131_bases
ATGACGCAATCCAAGACGGGCGCGCTGGCCGGCATCCGCGTGGTCGACCTGTCGCGCATCCTGGGCGGCCCGTACTGCGG
GCAGATTCTCGGCGACCACGGCGCCGACGTGCTGAAGATCGAACCGCCGCAGGGCGATGACACGCGTACCTGGGGCCCTC
CGTTCAAGGATGGCGTCGCGTCCTATTACTTCGGGCTGAACCGCAACAAGCGCGTGATGAAGCTCGATCTCACGGCCGAG
TCGGACCGCAGCGTGCTGCTCGCGCTGCTGGAAGATGCTGATGTGCTGGTCGAGAACTTCAAGACCGGCACCATGGAGAA
GTGGGGGCTTGGCTTCGACACGCTGTCGGCTCGCTTTCCGCGTCTGATTCACTGCCGGGTTTCCGGTTTCGGTGCGGATG
GCCCGCTCGGCGGCCTGCCCGGCTATGACGCCGCTGTACAGGCCATGGCTGGCCTCATGAGCATCAACGGCGAGCCCGAT
GGCAATGCCCTGCGTGTCGGCCTGCCGGTCGTCGATATGGTCACGGGCATGAACGCCGCGCTCGGCGTGCTGCTGGCGCT
GCAGGAACGCGAGCGCAGCGGGCGCGGACAGTTCGTCGAAGCCGCGCTGTATGACTCGGGCCTGTCGCTGCTGCATCCGC
ACGCGGCGAACTGGTTCATGAATGGCAAGACGCCGGTGCGGACGGGCAATGCGCATCCGAACATCTATCCGTATGACACG
GTAGCCACCGGCACGGATCCGATTTTCCTCGCCGTGGGCAATGACCGGCAGTTCCGCATCCTCTGCGAGCATCTGCGGAT
TCCTGCATTGGCCGACGACGAACGCTATGCCACGGCAGGCGGACGCTCGGTCAACCGCGTGGCGCTGAAGGCCGAACTGG
AAGCGCGCATGCGCGAGCTGGACGGCAAGGTGCTGGCCGATACGCTGGTCGCGGCCGGCGTGCCATGCGCGCCGGTGCTA
TCGGTGCCGGATGCCCTGCAGCATCCGCATACCGTGCATCGTGAAATGGTGGTCGAGATGGAAGGGGGCTACAAGGGGCT
GGGCGCCCCCGTGAAGCTGAGCCGCACGCCCGCGACGTACCGGTTCGCGCCGTTGACGGAAGGCGACCAGTTCCTGCCGA
AGGAAGACTGA

Upstream 100 bases:

>100_bases
ATCAGCTCGGCGGCTTCGTGAAGTCCGAAGTCAGCAAGTGGCGTACCGTCGTGCAGAAGTCTGGCGCGCAACTCGACTGA
GACTGACAAGGAGCGATGTC

Downstream 100 bases:

>100_bases
TAACGCCCCTGTTGCGATGCGGTGCTGCTGGCTCATTGCATCTGGATGTTGCCGCGCTTCACGACCGCACGCCACTTGAG
CAGATCCGCTGACAGTACGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTQSKTGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMKLDLTAE
SDRSVLLALLEDADVLVENFKTGTMEKWGLGFDTLSARFPRLIHCRVSGFGADGPLGGLPGYDAAVQAMAGLMSINGEPD
GNALRVGLPVVDMVTGMNAALGVLLALQERERSGRGQFVEAALYDSGLSLLHPHAANWFMNGKTPVRTGNAHPNIYPYDT
VATGTDPIFLAVGNDRQFRILCEHLRIPALADDERYATAGGRSVNRVALKAELEARMRELDGKVLADTLVAAGVPCAPVL
SVPDALQHPHTVHREMVVEMEGGYKGLGAPVKLSRTPATYRFAPLTEGDQFLPKED

Sequences:

>Translated_376_residues
MTQSKTGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMKLDLTAE
SDRSVLLALLEDADVLVENFKTGTMEKWGLGFDTLSARFPRLIHCRVSGFGADGPLGGLPGYDAAVQAMAGLMSINGEPD
GNALRVGLPVVDMVTGMNAALGVLLALQERERSGRGQFVEAALYDSGLSLLHPHAANWFMNGKTPVRTGNAHPNIYPYDT
VATGTDPIFLAVGNDRQFRILCEHLRIPALADDERYATAGGRSVNRVALKAELEARMRELDGKVLADTLVAAGVPCAPVL
SVPDALQHPHTVHREMVVEMEGGYKGLGAPVKLSRTPATYRFAPLTEGDQFLPKED
>Mature_375_residues
TQSKTGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMKLDLTAES
DRSVLLALLEDADVLVENFKTGTMEKWGLGFDTLSARFPRLIHCRVSGFGADGPLGGLPGYDAAVQAMAGLMSINGEPDG
NALRVGLPVVDMVTGMNAALGVLLALQERERSGRGQFVEAALYDSGLSLLHPHAANWFMNGKTPVRTGNAHPNIYPYDTV
ATGTDPIFLAVGNDRQFRILCEHLRIPALADDERYATAGGRSVNRVALKAELEARMRELDGKVLADTLVAAGVPCAPVLS
VPDALQHPHTVHREMVVEMEGGYKGLGAPVKLSRTPATYRFAPLTEGDQFLPKED

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=334, Percent_Identity=34.7305389221557, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI300863124, Length=324, Percent_Identity=34.2592592592593, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI13376042, Length=324, Percent_Identity=30.8641975308642, Blast_Score=182, Evalue=6e-46,
Organism=Homo sapiens, GI300863126, Length=334, Percent_Identity=31.1377245508982, Blast_Score=180, Evalue=1e-45,
Organism=Homo sapiens, GI42794625, Length=249, Percent_Identity=32.9317269076305, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=32.9317269076305, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=32.9317269076305, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266456254, Length=249, Percent_Identity=32.9317269076305, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=38.3561643835616, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87082093, Length=356, Percent_Identity=40.1685393258427, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI1788717, Length=385, Percent_Identity=30.3896103896104, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786222, Length=358, Percent_Identity=23.1843575418994, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=218, Percent_Identity=29.3577981651376, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=264, Percent_Identity=26.8939393939394, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=363, Percent_Identity=38.2920110192837, Blast_Score=235, Evalue=5e-62,
Organism=Drosophila melanogaster, GI24585488, Length=366, Percent_Identity=29.2349726775956, Blast_Score=118, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40429; Mature: 40298

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSKTGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVA
CCCCCCCCEEEEEEEEHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRVMKLDLTAESDRSVLLALLEDADVLVENFKTGTMEKWGLGFDTLSARFP
HHHCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCCC
RLIHCRVSGFGADGPLGGLPGYDAAVQAMAGLMSINGEPDGNALRVGLPVVDMVTGMNAA
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCHHH
LGVLLALQERERSGRGQFVEAALYDSGLSLLHPHAANWFMNGKTPVRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCCEEEEEHHHCCCHHCCCCCCCEEECCCCCEECCCCCCCCCCCCC
VATGTDPIFLAVGNDRQFRILCEHLRIPALADDERYATAGGRSVNRVALKAELEARMREL
CCCCCCEEEEEECCCCEEEHHHHHHCCCCCCCCCCEECCCCCCEEEEEEHHHHHHHHHHH
DGKVLADTLVAAGVPCAPVLSVPDALQHPHTVHREMVVEMEGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCCCHHCCCCHHHCCCHHHHHEEEEEECCCCCCCCCCEEEECCCCEE
RFAPLTEGDQFLPKED
EEEECCCCCCCCCCCC
>Mature Secondary Structure 
TQSKTGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVA
CCCCCCCEEEEEEEEHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRVMKLDLTAESDRSVLLALLEDADVLVENFKTGTMEKWGLGFDTLSARFP
HHHCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCCC
RLIHCRVSGFGADGPLGGLPGYDAAVQAMAGLMSINGEPDGNALRVGLPVVDMVTGMNAA
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCHHH
LGVLLALQERERSGRGQFVEAALYDSGLSLLHPHAANWFMNGKTPVRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCCEEEEEHHHCCCHHCCCCCCCEEECCCCCEECCCCCCCCCCCCC
VATGTDPIFLAVGNDRQFRILCEHLRIPALADDERYATAGGRSVNRVALKAELEARMREL
CCCCCCEEEEEECCCCEEEHHHHHHCCCCCCCCCCEECCCCCCEEEEEEHHHHHHHHHHH
DGKVLADTLVAAGVPCAPVLSVPDALQHPHTVHREMVVEMEGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCCCHHCCCCHHHCCCHHHHHEEEEEECCCCCCCCCCEEEECCCCEE
RFAPLTEGDQFLPKED
EEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]