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The map label for this gene is hofB [C]

Identifier: 73539233

GI number: 73539233

Start: 2198255

End: 2199577

Strand: Direct

Name: hofB [C]

Synonym: Reut_B5411

Alternate gene names: 73539233

Gene position: 2198255-2199577 (Clockwise)

Preceding gene: 73539232

Following gene: 73539234

Centisome position: 80.64

GC content: 66.36

Gene sequence:

>1323_bases
ATGACGCAAGCGATCGAATTCTCGGACAACGCCCCCGCACCGTTCCCCGTCTCGCAGGAATTTCACAACATCAAGGAAGC
GGCGCACGAACACTTGCTCACTCGTATCGAGGAACTGGGCGCGGAGTTCGGCCGCTGGTCGCGCACCGCGATCCAGCGCT
TCGTCGACCTGGAGCTAGAGAGCTTTACGCGCCTGCGGCGCATTCCGATCAACGAGGCGGAACTACGGCAGATCGCCGAG
GCGCTGACCAAGGAGCTGGCGGGCTTCGGGCCCATCGAAGACCTGCTCAACGACCCTGCGGTCGAGGACATCCTGGTCAA
CGGGCACCGGGATGTGTACGTGTCCCGGCACGGCGTGCTTGAGCGCATCCCGGTGCGGTTTGCCGACGGCGGCCACCTGC
TGCGGATCGTGCGCCGCATCCTGGCGCCGATCGGGCGGCGGCTGGACGAGTCTTCGCCCATGGTCGACGCGCGCTTGCCC
GACGGCGGGCGCATCAATGTCATCGTGCCGCCGCTCGCGCTGGAAGGCCCGGTGGTGTCGATCCGCAAGTTCCGCAAGGA
CCCGCTGACGCCCGCGGACCTGCAGAACCTGGGTACCATGAGCCCGGAGATTTCGGAGTTGCTGGAGGCCGCGGTCAAGG
CCCGCTGCAACATCCTGGTCAGCGGCGGCACCAGTTCCGGCAAGACTTCCCTGCTCAATGCACTGGCCACGTTCGTGCCT
GCGGGCGAGCGCGTGATCACCATCGAGGATACGGCCGAACTCGCGCTGAACCATCCGCACGTGGTGCGGCTGGAAAGCCG
GCCCGGCGGCTTCGAGGGCACCGGCGTGGTGACGATCCGCGACTTGCTGCGGAACAGTTTGCGCATGCGTCCCGACCGCA
TCATCGTCGGCGAAGTGCGCGGTGGCGAAGTGCTCGAGATGCTGCAGGCCATGAGCACCGGCCACGATGGCTCGATGGGC
ACGATCCACGCCAGCAGCCCGCGCGAATGCCTCTACCGCCTCGAGATGCTCGCCGGCTTTGCCGGCTTCCAGGGCAGCGA
GCAGAGCCTGCGCCGGCAGATTGCCAACGCCATCGACTTCATCGTCCAGATCGGGCGCCTGTCCAACGGCAAGCGCCGCA
TTATCTCGATCACCGAGGTCACGGGGCTCGGCGACAACATCGTCTCGACACAGGAGCTTTACCGCCACGAACCGTTCACC
GGACCGGACGGCACCGAGACCGACCGCTGGCTGTCTCTTGGCATCCTGCCGCATTCGCCAAAGCTCGCGCGCATGCGGCC
GCCGGGCGGCGGCTTCATGATGGATGACCGCTTCGATGTCTAG

Upstream 100 bases:

>100_bases
AGGCCCGTGCAGCGCAGTCGGCTGACCCGCGTGAAGAACAAGCTGCCCCATGCATTGCGTGCGTTGCGTGCAATGCGCGC
GGCACTGCCAGGAAACTGAC

Downstream 100 bases:

>100_bases
CGCCACGCTGCTGCTTGCGGCCATGGCCCTGGGTGTCACCAGCCTGGGGTTGCTGCTGCTGGCCAACGCGCAGGCGCGCG
CCCGCAAGGAGCAGGCCGAT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTQAIEFSDNAPAPFPVSQEFHNIKEAAHEHLLTRIEELGAEFGRWSRTAIQRFVDLELESFTRLRRIPINEAELRQIAE
ALTKELAGFGPIEDLLNDPAVEDILVNGHRDVYVSRHGVLERIPVRFADGGHLLRIVRRILAPIGRRLDESSPMVDARLP
DGGRINVIVPPLALEGPVVSIRKFRKDPLTPADLQNLGTMSPEISELLEAAVKARCNILVSGGTSSGKTSLLNALATFVP
AGERVITIEDTAELALNHPHVVRLESRPGGFEGTGVVTIRDLLRNSLRMRPDRIIVGEVRGGEVLEMLQAMSTGHDGSMG
TIHASSPRECLYRLEMLAGFAGFQGSEQSLRRQIANAIDFIVQIGRLSNGKRRIISITEVTGLGDNIVSTQELYRHEPFT
GPDGTETDRWLSLGILPHSPKLARMRPPGGGFMMDDRFDV

Sequences:

>Translated_440_residues
MTQAIEFSDNAPAPFPVSQEFHNIKEAAHEHLLTRIEELGAEFGRWSRTAIQRFVDLELESFTRLRRIPINEAELRQIAE
ALTKELAGFGPIEDLLNDPAVEDILVNGHRDVYVSRHGVLERIPVRFADGGHLLRIVRRILAPIGRRLDESSPMVDARLP
DGGRINVIVPPLALEGPVVSIRKFRKDPLTPADLQNLGTMSPEISELLEAAVKARCNILVSGGTSSGKTSLLNALATFVP
AGERVITIEDTAELALNHPHVVRLESRPGGFEGTGVVTIRDLLRNSLRMRPDRIIVGEVRGGEVLEMLQAMSTGHDGSMG
TIHASSPRECLYRLEMLAGFAGFQGSEQSLRRQIANAIDFIVQIGRLSNGKRRIISITEVTGLGDNIVSTQELYRHEPFT
GPDGTETDRWLSLGILPHSPKLARMRPPGGGFMMDDRFDV
>Mature_439_residues
TQAIEFSDNAPAPFPVSQEFHNIKEAAHEHLLTRIEELGAEFGRWSRTAIQRFVDLELESFTRLRRIPINEAELRQIAEA
LTKELAGFGPIEDLLNDPAVEDILVNGHRDVYVSRHGVLERIPVRFADGGHLLRIVRRILAPIGRRLDESSPMVDARLPD
GGRINVIVPPLALEGPVVSIRKFRKDPLTPADLQNLGTMSPEISELLEAAVKARCNILVSGGTSSGKTSLLNALATFVPA
GERVITIEDTAELALNHPHVVRLESRPGGFEGTGVVTIRDLLRNSLRMRPDRIIVGEVRGGEVLEMLQAMSTGHDGSMGT
IHASSPRECLYRLEMLAGFAGFQGSEQSLRRQIANAIDFIVQIGRLSNGKRRIISITEVTGLGDNIVSTQELYRHEPFTG
PDGTETDRWLSLGILPHSPKLARMRPPGGGFMMDDRFDV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=333, Percent_Identity=26.4264264264264, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48516; Mature: 48385

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAIEFSDNAPAPFPVSQEFHNIKEAAHEHLLTRIEELGAEFGRWSRTAIQRFVDLELE
CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SFTRLRRIPINEAELRQIAEALTKELAGFGPIEDLLNDPAVEDILVNGHRDVYVSRHGVL
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHCCCCEEEEECCCHH
ERIPVRFADGGHLLRIVRRILAPIGRRLDESSPMVDARLPDGGRINVIVPPLALEGPVVS
HHCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHH
IRKFRKDPLTPADLQNLGTMSPEISELLEAAVKARCNILVSGGTSSGKTSLLNALATFVP
HHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCC
AGERVITIEDTAELALNHPHVVRLESRPGGFEGTGVVTIRDLLRNSLRMRPDRIIVGEVR
CCCEEEEEECHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
GGEVLEMLQAMSTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGSEQSLRRQIANAIDF
CCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IVQIGRLSNGKRRIISITEVTGLGDNIVSTQELYRHEPFTGPDGTETDRWLSLGILPHSP
HHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
KLARMRPPGGGFMMDDRFDV
CCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQAIEFSDNAPAPFPVSQEFHNIKEAAHEHLLTRIEELGAEFGRWSRTAIQRFVDLELE
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SFTRLRRIPINEAELRQIAEALTKELAGFGPIEDLLNDPAVEDILVNGHRDVYVSRHGVL
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHCCCCEEEEECCCHH
ERIPVRFADGGHLLRIVRRILAPIGRRLDESSPMVDARLPDGGRINVIVPPLALEGPVVS
HHCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHH
IRKFRKDPLTPADLQNLGTMSPEISELLEAAVKARCNILVSGGTSSGKTSLLNALATFVP
HHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCC
AGERVITIEDTAELALNHPHVVRLESRPGGFEGTGVVTIRDLLRNSLRMRPDRIIVGEVR
CCCEEEEEECHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
GGEVLEMLQAMSTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGSEQSLRRQIANAIDF
CCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IVQIGRLSNGKRRIISITEVTGLGDNIVSTQELYRHEPFTGPDGTETDRWLSLGILPHSP
HHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
KLARMRPPGGGFMMDDRFDV
CCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]