Click here to switch to the map view.

The map label for this gene is hofQ [C]

Identifier: 73539231

GI number: 73539231

Start: 2195524

End: 2196933

Strand: Direct

Name: hofQ [C]

Synonym: Reut_B5409

Alternate gene names: 73539231

Gene position: 2195524-2196933 (Clockwise)

Preceding gene: 73539230

Following gene: 73539232

Centisome position: 80.54

GC content: 65.96

Gene sequence:

>1410_bases
ATGATCCGTCGAAGCGTAGGCGCCATCCTGCTCCCTGACTCCATGATTCGCGATGCCATGATGAAGACGCTGCTTGCAGC
CATGCTTGCCACGGCCATGCTAGTGACAGCGATCCCGCGCGCCACAGCGCAAGAGGCCGCGCCGGCGCCGTCTACGCTGC
GGTTGATGGCCGGCGCGCAGAAGGAGATCCGCCCCGCGCAGCCGATCGAGCGCGTCGCGGTCGGCAATCCGGCCGTCGCC
GACGCGCTGCTTATCAAGCAGCGCAGCGGGCCGCCAGGTGTGTTAGTCGTGGCCAAACAGCCGGGCGTCACCGATCTGAT
GATCTGGCCAAGGGGCGCTGCGCAGCAGACGTACACGGTGCAGGTGGATGCCATCACCCCGGACACCGGCGGTGCGAATA
TCGCGTATTCGGCCGTCGGCGCCACCATTACCGGCCAGTCGCGTGACGCCTACGCCGCGGCCCGCGCACAGACGGCGGCG
CGCGTGGGATCCGGCAAGGGCGGGGTAGTGGTGGACCGCTCCACCGTGCCGGTCAGCAACACGGTCCAGGTCGACGTGAA
AGTCGTCGAAATCAGCAAGACCGTGCTCAAGGAAGTCGGCATCAACTTCTTTCGCAACAATTCCGGCTTTGCCTTCGGCT
CGTTCTCGCCGTCAACGCTTAGCAAGTTCACCTTTACGCCCGGTACGGGCGGTGCCAACGGCAGTTTCAGCGCGGACATC
ACGACGCCGATCAGCAATGCCTTCAACCTGGTCGCGGCCTCCCTGTCGCACGGCTTCTTCGCCAACATCAGCCTGCTTGA
AGCCAATGGCCTCGCGCGCGTGCTGGCCGAGCCGAGCCTGGTGGCGCTGTCCGGCCAGAGCGCAAGCTTCCTGTCCGGCG
GCGAGATCCCCATCCCGGTGCCGCAGGCCCTCGGCACGACCACCATCCAGTTCAAGCCGTTCGGCATCGGGCTGACGGTG
TCACCCACGGTTCTGTCGGACCAGCGCATTGCGCTCAAGGTGGCGCCAGAGGCAAGCGACCTCGATCCGTCGCGTGGCAT
TGCCATCAACGGTGCCATCGTGCCGGCCATTGTCACGCGGCGTGCCGATACCACGATCGAGCTGGGCGACGGCGAGAGTT
TCGTGATCGGCGGGCTGGTCAGCCGCAATACCGTCAGCAATGTGAACAAGGTGCCCTTCCTGGGCGACCTGCCTGTCATC
GGACCGTTCTTCAAGAACCTGAACTTCCACCAGGAAGACAGAGAACTGATGATCGTGGTCACCCCACGGCTGGTGAAGCC
GCTGGCCCGGGCGGCGCCGGCAGTCGCTGCGATCGGCGGCGACGGCCGCACCAGCGCCGACCCGGCGGTATGGGGCAAAT
TCGTGGCGGGCGAGTACGTGGATCCGTCGCTGCCGGGGTTCTCGCGCTAG

Upstream 100 bases:

>100_bases
AGTGTGGCGCCTGTAGCGGGACAGGGCCGGCCGGAACGGCAGCTTGCGGGTGTGGAAGTGATTCGCGCAGGCAAGCGCGA
GATCGAATAGCGAGACGCTC

Downstream 100 bases:

>100_bases
CCGGCCCGGTTCCTGGAAGGTTATGTCGGACATGAAAGAGACGGAATCATGGACCAATTCCTGTTGCATGCAACCCGGGA
CGACGTACGCGAATGGCTTG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MIRRSVGAILLPDSMIRDAMMKTLLAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVA
DALLIKQRSGPPGVLVVAKQPGVTDLMIWPRGAAQQTYTVQVDAITPDTGGANIAYSAVGATITGQSRDAYAAARAQTAA
RVGSGKGGVVVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADI
TTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIPVPQALGTTTIQFKPFGIGLTV
SPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVI
GPFFKNLNFHQEDRELMIVVTPRLVKPLARAAPAVAAIGGDGRTSADPAVWGKFVAGEYVDPSLPGFSR

Sequences:

>Translated_469_residues
MIRRSVGAILLPDSMIRDAMMKTLLAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVA
DALLIKQRSGPPGVLVVAKQPGVTDLMIWPRGAAQQTYTVQVDAITPDTGGANIAYSAVGATITGQSRDAYAAARAQTAA
RVGSGKGGVVVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADI
TTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIPVPQALGTTTIQFKPFGIGLTV
SPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVI
GPFFKNLNFHQEDRELMIVVTPRLVKPLARAAPAVAAIGGDGRTSADPAVWGKFVAGEYVDPSLPGFSR
>Mature_469_residues
MIRRSVGAILLPDSMIRDAMMKTLLAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVA
DALLIKQRSGPPGVLVVAKQPGVTDLMIWPRGAAQQTYTVQVDAITPDTGGANIAYSAVGATITGQSRDAYAAARAQTAA
RVGSGKGGVVVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADI
TTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIPVPQALGTTTIQFKPFGIGLTV
SPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVI
GPFFKNLNFHQEDRELMIVVTPRLVKPLARAAPAVAAIGGDGRTSADPAVWGKFVAGEYVDPSLPGFSR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=308, Percent_Identity=29.2207792207792, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082242, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 48518; Mature: 48518

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRSVGAILLPDSMIRDAMMKTLLAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQ
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHEECCCH
KEIRPAQPIERVAVGNPAVADALLIKQRSGPPGVLVVAKQPGVTDLMIWPRGAAQQTYTV
HHCCCCCCHHHHHCCCCHHHHHHEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEE
QVDAITPDTGGANIAYSAVGATITGQSRDAYAAARAQTAARVGSGKGGVVVDRSTVPVSN
EEEEECCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
TVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADI
EEEEEEEEEEHHHHHHHHHCCEEEECCCCEEECCCCCCCCCEEEECCCCCCCCCEEEEEE
TTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIPV
CCCHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
PQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTR
CHHCCCEEEEEEEEEECEEECCCEECCCEEEEEECCCCCCCCCCCCEEECCEEEEHHHCC
RADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDRELMIVV
CCCCEEEECCCCEEEEECEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEE
TPRLVKPLARAAPAVAAIGGDGRTSADPAVWGKFVAGEYVDPSLPGFSR
CCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRRSVGAILLPDSMIRDAMMKTLLAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQ
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHEECCCH
KEIRPAQPIERVAVGNPAVADALLIKQRSGPPGVLVVAKQPGVTDLMIWPRGAAQQTYTV
HHCCCCCCHHHHHCCCCHHHHHHEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEE
QVDAITPDTGGANIAYSAVGATITGQSRDAYAAARAQTAARVGSGKGGVVVDRSTVPVSN
EEEEECCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
TVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADI
EEEEEEEEEEHHHHHHHHHCCEEEECCCCEEECCCCCCCCCEEEECCCCCCCCCEEEEEE
TTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIPV
CCCHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
PQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTR
CHHCCCEEEEEEEEEECEEECCCEECCCEEEEEECCCCCCCCCCCCEEECCEEEEHHHCC
RADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDRELMIVV
CCCCEEEECCCCEEEEECEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEE
TPRLVKPLARAAPAVAAIGGDGRTSADPAVWGKFVAGEYVDPSLPGFSR
CCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]