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The map label for this gene is ycgR [H]

Identifier: 73539135

GI number: 73539135

Start: 2075990

End: 2076787

Strand: Reverse

Name: ycgR [H]

Synonym: Reut_B5312

Alternate gene names: 73539135

Gene position: 2076787-2075990 (Counterclockwise)

Preceding gene: 73539136

Following gene: 73539132

Centisome position: 76.18

GC content: 64.54

Gene sequence:

>798_bases
ATGTTGCCTGATTCCATGAGCCTCCAAGAATTTCCCGAGTCCACCCAAGCCGGCGACGGCCAGCGAGACGATATCGATGA
GGGGCCAGGCGCTGCGCAGCCGGACGAGCGCTATCGGCTGACCCATACGTCGCAGATCGGCACGGTGCTGCGCGACCTGT
CCTGGCAGAAGTGCCTGATCACCGTGCGCACGCGCACCGGCCATCAGTTCGTGACGTCGATCCTGCACATGGATCCGGTC
AACCGGACGTTTATCTTCGACTGGTGCAACGCTGATGCCGAACGCCAGTCGCTGATGACGTCGGACGAGAACGCGTTTTC
GGGTTTGCTGCGCGGCGTGCCGGTCAACTTCGTGGTCGGCCGTCCGGCGGCCACGCGCCACGACGACCGTCCGGCCTTTA
CCGCCGAGTTTCCCGAGAAGCTTTACCACTTCCAGCGCCGCCGGCATTTCCGCGCCCGCACGCTGGTGACCAAGGGCTAC
CGCTGCGAAGTCCGCAACCCGGACAACAGCGTGCTGTCGCTCGACATTGCCGACCTGTCGCTGTCCGGTGTCGGCCTGCG
TTCGAAGACGGTTGGCGAAGACCGCCTGCCCGTGGGCACGATGGTGAGCCGCTGCCGCCTGGATTTCCGCGAGCTGGGCA
AGCTCGACATCGATCTCCAGATCGTCGGCCACTGGCTGGTCGGCAACGACGACAGCGCGATCCACCACTATGGCTGCGCG
TTCGTGAACCCGGACGGACGCATAGAGAATTTTCTGCAGCGCCTGGTGTTTGCGCTGGAACTCGCGCACCGCGGCTGA

Upstream 100 bases:

>100_bases
CGTCGAACGCAGCGTCCCCTTAATATGCGGCGCTCGGCCGCATGCCGTTTCTGCCGCGCCGCCCCCTGAACGTGAATGCG
CGCGGTGCGCTGCCATCCTG

Downstream 100 bases:

>100_bases
GGCCGCAAGCTGCCTCAGCGAACCGCGGCGCGGTCAGGACGTACGATCAGGACGTGATCAGGCGGCCAATGGCCGCGGCC
GCTTCGCGCATCGGCGGCAG

Product: YcgR

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLPDSMSLQEFPESTQAGDGQRDDIDEGPGAAQPDERYRLTHTSQIGTVLRDLSWQKCLITVRTRTGHQFVTSILHMDPV
NRTFIFDWCNADAERQSLMTSDENAFSGLLRGVPVNFVVGRPAATRHDDRPAFTAEFPEKLYHFQRRRHFRARTLVTKGY
RCEVRNPDNSVLSLDIADLSLSGVGLRSKTVGEDRLPVGTMVSRCRLDFRELGKLDIDLQIVGHWLVGNDDSAIHHYGCA
FVNPDGRIENFLQRLVFALELAHRG

Sequences:

>Translated_265_residues
MLPDSMSLQEFPESTQAGDGQRDDIDEGPGAAQPDERYRLTHTSQIGTVLRDLSWQKCLITVRTRTGHQFVTSILHMDPV
NRTFIFDWCNADAERQSLMTSDENAFSGLLRGVPVNFVVGRPAATRHDDRPAFTAEFPEKLYHFQRRRHFRARTLVTKGY
RCEVRNPDNSVLSLDIADLSLSGVGLRSKTVGEDRLPVGTMVSRCRLDFRELGKLDIDLQIVGHWLVGNDDSAIHHYGCA
FVNPDGRIENFLQRLVFALELAHRG
>Mature_265_residues
MLPDSMSLQEFPESTQAGDGQRDDIDEGPGAAQPDERYRLTHTSQIGTVLRDLSWQKCLITVRTRTGHQFVTSILHMDPV
NRTFIFDWCNADAERQSLMTSDENAFSGLLRGVPVNFVVGRPAATRHDDRPAFTAEFPEKLYHFQRRRHFRARTLVTKGY
RCEVRNPDNSVLSLDIADLSLSGVGLRSKTVGEDRLPVGTMVSRCRLDFRELGKLDIDLQIVGHWLVGNDDSAIHHYGCA
FVNPDGRIENFLQRLVFALELAHRG

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=218, Percent_Identity=26.1467889908257, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 29978; Mature: 29978

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDSMSLQEFPESTQAGDGQRDDIDEGPGAAQPDERYRLTHTSQIGTVLRDLSWQKCLI
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEE
TVRTRTGHQFVTSILHMDPVNRTFIFDWCNADAERQSLMTSDENAFSGLLRGVPVNFVVG
EEECCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHCCCEEEEEC
RPAATRHDDRPAFTAEFPEKLYHFQRRRHFRARTLVTKGYRCEVRNPDNSVLSLDIADLS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCE
LSGVGLRSKTVGEDRLPVGTMVSRCRLDFRELGKLDIDLQIVGHWLVGNDDSAIHHYGCA
ECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCEEEEEEEEEEECCCCCCEEECCEE
FVNPDGRIENFLQRLVFALELAHRG
EECCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPDSMSLQEFPESTQAGDGQRDDIDEGPGAAQPDERYRLTHTSQIGTVLRDLSWQKCLI
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEE
TVRTRTGHQFVTSILHMDPVNRTFIFDWCNADAERQSLMTSDENAFSGLLRGVPVNFVVG
EEECCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHCCCEEEEEC
RPAATRHDDRPAFTAEFPEKLYHFQRRRHFRARTLVTKGYRCEVRNPDNSVLSLDIADLS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCE
LSGVGLRSKTVGEDRLPVGTMVSRCRLDFRELGKLDIDLQIVGHWLVGNDDSAIHHYGCA
ECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCEEEEEEEEEEECCCCCCEEECCEE
FVNPDGRIENFLQRLVFALELAHRG
EECCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA