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The map label for this gene is yfdE [H]

Identifier: 73539129

GI number: 73539129

Start: 2068986

End: 2070083

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B5306

Alternate gene names: 73539129

Gene position: 2070083-2068986 (Counterclockwise)

Preceding gene: 73539130

Following gene: 73539119

Centisome position: 75.93

GC content: 66.12

Gene sequence:

>1098_bases
ATGAAACCAGAGTGGTCCTGCCTCAGGGACGTGAAGATCATCGACGTCAGCCAGTTACTGCCTGGACCGCATGCCACCAG
CCTGCTGATGCAGCTTGGCGCGGACGTGATCAAGGTGGAGCAGCCGGGCACGGGCGACACCTCGCGCCAGCTGGGCAAGG
CGGTATTTGCGCAGTTCAATCGTGGCAAGCAGTCCGTGGCGCTCGACCTGAAGTCGGCGCACGGCCGCGAGGCCTTCCTT
GCGCTGGTGCGCGATGCGGATGCGGTGGTGGAAGGTTTCCGCCCGGGCGTGATGCGGCGGCTTGGACTCGACTACGAGGC
GCTGGCCGCGGTCAACCCGGCCATCGTGCTGTGCTCGGTCTCCGGCTTCGGGCAGGAAGGTCCGTACGCGGACCATGCCG
GCCATGACCTCAACTACCTGGCGCTCGCCGGCTACTGGTCGGTGCCGGTGCAGGTGCACGACAAGGTATCGCGGCCGCGT
GCGCGTATCTCGGACTACGCGGCATCGGGCTATGCGGCACTGTCGCTGGCGGTGGCCATCATGAGCGCGCGTCAGAACGG
CCACGGCCAGCATCTCGACGTATCGATCCACGATGCGATCCTGTCGTGGACCGCGCACGGCGCATGGGCCGCGCGCGGCT
ACGAAGAGAGGCCTGCCGATGCGCCAATGGTGATGCCGGACAACGACCTGTTCGAAACGCGCGATGGCCGCCACCTGGCG
CTTGGCATCCTGGAAAACAAGTTCTGGGGGAACCTGGGCGAAGCCCTTGGCGAAACCTTCCCCGCATTGCGCGATCCGCG
CTTTGCACAACGGCCGGGCCGGCAGCAGCACAAGGCCGAAGTGCATGGCCTGTTGCAGGAGATTTTCAGGTCGCGCACGC
TGGCCGAGTGGACGGACACGTTTGCCGCGGTCGATGTGCCGTTCTCGCCTGCGCTCGGCGCACGCGAGCTGTTTGACGAT
CCGCACATCAAGGCACGCGGCACAGTTCGTCATCTGCCTGATGAGGACGCGATCGCGCTGCGGTTTCCGGTGAAGTTCTC
GCTGGGTCTGCCGGATGGTGATGACACGGTGCCGCCGCTGGGTGGCGCTGGCGGCTGA

Upstream 100 bases:

>100_bases
GTTCCGCGACATGGTCGCCGCCGATAACGCCCGCTACGGCGCGCTGATGCGTTCGATCGGCATGCTTGCCGATGTCGGCT
AAATCTTGCGGAGCGTTGCG

Downstream 100 bases:

>100_bases
CGACCGGCGACGCTGATCGAGCTGACCACGCGGAGGCCTCGTCAGCGTCGTCAGAGCTTCTGCTGCGCCGCGAGCGCGAG
AATCTTCGCCCACCGCCGCG

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MKPEWSCLRDVKIIDVSQLLPGPHATSLLMQLGADVIKVEQPGTGDTSRQLGKAVFAQFNRGKQSVALDLKSAHGREAFL
ALVRDADAVVEGFRPGVMRRLGLDYEALAAVNPAIVLCSVSGFGQEGPYADHAGHDLNYLALAGYWSVPVQVHDKVSRPR
ARISDYAASGYAALSLAVAIMSARQNGHGQHLDVSIHDAILSWTAHGAWAARGYEERPADAPMVMPDNDLFETRDGRHLA
LGILENKFWGNLGEALGETFPALRDPRFAQRPGRQQHKAEVHGLLQEIFRSRTLAEWTDTFAAVDVPFSPALGARELFDD
PHIKARGTVRHLPDEDAIALRFPVKFSLGLPDGDDTVPPLGGAGG

Sequences:

>Translated_365_residues
MKPEWSCLRDVKIIDVSQLLPGPHATSLLMQLGADVIKVEQPGTGDTSRQLGKAVFAQFNRGKQSVALDLKSAHGREAFL
ALVRDADAVVEGFRPGVMRRLGLDYEALAAVNPAIVLCSVSGFGQEGPYADHAGHDLNYLALAGYWSVPVQVHDKVSRPR
ARISDYAASGYAALSLAVAIMSARQNGHGQHLDVSIHDAILSWTAHGAWAARGYEERPADAPMVMPDNDLFETRDGRHLA
LGILENKFWGNLGEALGETFPALRDPRFAQRPGRQQHKAEVHGLLQEIFRSRTLAEWTDTFAAVDVPFSPALGARELFDD
PHIKARGTVRHLPDEDAIALRFPVKFSLGLPDGDDTVPPLGGAGG
>Mature_365_residues
MKPEWSCLRDVKIIDVSQLLPGPHATSLLMQLGADVIKVEQPGTGDTSRQLGKAVFAQFNRGKQSVALDLKSAHGREAFL
ALVRDADAVVEGFRPGVMRRLGLDYEALAAVNPAIVLCSVSGFGQEGPYADHAGHDLNYLALAGYWSVPVQVHDKVSRPR
ARISDYAASGYAALSLAVAIMSARQNGHGQHLDVSIHDAILSWTAHGAWAARGYEERPADAPMVMPDNDLFETRDGRHLA
LGILENKFWGNLGEALGETFPALRDPRFAQRPGRQQHKAEVHGLLQEIFRSRTLAEWTDTFAAVDVPFSPALGARELFDD
PHIKARGTVRHLPDEDAIALRFPVKFSLGLPDGDDTVPPLGGAGG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=336, Percent_Identity=28.2738095238095, Blast_Score=145, Evalue=6e-35,
Organism=Homo sapiens, GI300863124, Length=331, Percent_Identity=28.3987915407855, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI42794625, Length=338, Percent_Identity=29.2899408284024, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI266456254, Length=338, Percent_Identity=29.2899408284024, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI266458393, Length=257, Percent_Identity=31.9066147859922, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=31.4516129032258, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI300863126, Length=333, Percent_Identity=27.3273273273273, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=39.4160583941606, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=39.4160583941606, Blast_Score=101, Evalue=9e-22,
Organism=Escherichia coli, GI87082093, Length=326, Percent_Identity=31.2883435582822, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788717, Length=386, Percent_Identity=24.8704663212435, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1786222, Length=359, Percent_Identity=23.6768802228412, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=318, Percent_Identity=27.3584905660377, Blast_Score=124, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI32564160, Length=317, Percent_Identity=27.1293375394322, Blast_Score=117, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24648431, Length=370, Percent_Identity=30.2702702702703, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24585488, Length=328, Percent_Identity=30.4878048780488, Blast_Score=152, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39566; Mature: 39566

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPEWSCLRDVKIIDVSQLLPGPHATSLLMQLGADVIKVEQPGTGDTSRQLGKAVFAQFN
CCCCCCHHHCCEEEEHHHHCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHC
RGKQSVALDLKSAHGREAFLALVRDADAVVEGFRPGVMRRLGLDYEALAAVNPAIVLCSV
CCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEEEEEEC
SGFGQEGPYADHAGHDLNYLALAGYWSVPVQVHDKVSRPRARISDYAASGYAALSLAVAI
CCCCCCCCCCCCCCCCCCEEEEECEEECCEEEHHHHCCCHHHHHHHHHCCHHHHHHHHHH
MSARQNGHGQHLDVSIHDAILSWTAHGAWAARGYEERPADAPMVMPDNDLFETRDGRHLA
HHHHCCCCCCEEEEEHHHHHHHHHCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCEEE
LGILENKFWGNLGEALGETFPALRDPRFAQRPGRQQHKAEVHGLLQEIFRSRTLAEWTDT
EEEHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
FAAVDVPFSPALGARELFDDPHIKARGTVRHLPDEDAIALRFPVKFSLGLPDGDDTVPPL
HEEEECCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCEEEEECEEEEECCCCCCCCCCCC
GGAGG
CCCCC
>Mature Secondary Structure
MKPEWSCLRDVKIIDVSQLLPGPHATSLLMQLGADVIKVEQPGTGDTSRQLGKAVFAQFN
CCCCCCHHHCCEEEEHHHHCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHC
RGKQSVALDLKSAHGREAFLALVRDADAVVEGFRPGVMRRLGLDYEALAAVNPAIVLCSV
CCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEEEEEEC
SGFGQEGPYADHAGHDLNYLALAGYWSVPVQVHDKVSRPRARISDYAASGYAALSLAVAI
CCCCCCCCCCCCCCCCCCEEEEECEEECCEEEHHHHCCCHHHHHHHHHCCHHHHHHHHHH
MSARQNGHGQHLDVSIHDAILSWTAHGAWAARGYEERPADAPMVMPDNDLFETRDGRHLA
HHHHCCCCCCEEEEEHHHHHHHHHCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCEEE
LGILENKFWGNLGEALGETFPALRDPRFAQRPGRQQHKAEVHGLLQEIFRSRTLAEWTDT
EEEHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
FAAVDVPFSPALGARELFDDPHIKARGTVRHLPDEDAIALRFPVKFSLGLPDGDDTVPPL
HEEEECCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCEEEEECEEEEECCCCCCCCCCCC
GGAGG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]