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The map label for this gene is yiaD [H]

Identifier: 73539085

GI number: 73539085

Start: 2012449

End: 2014176

Strand: Reverse

Name: yiaD [H]

Synonym: Reut_B5262

Alternate gene names: 73539085

Gene position: 2014176-2012449 (Counterclockwise)

Preceding gene: 73539086

Following gene: 73539084

Centisome position: 73.88

GC content: 67.01

Gene sequence:

>1728_bases
GTGTTCGTGACAGGCTATCCCTATCGCACGCTTTTCAGTTGGGTCACGGCGCTCGCGCTGGCCTGGCTGGCCCTCAGCTC
TCCCTGGGCAATGACCTGGAACCTGCTGCTGGCCGGGCTCGTCATCGTGCTGGCGCTTGTGGCTATCGTGGTTGCGACGC
GGCGTGCCCGTGCCCGCAGACAGGCGTCGCGGGCCGTGCTGGAGGCCATCCACGTGTCGTTGGACACACTTCCGGGAGAC
CTTCGCCAAAACACCCCGATCGTGCTGACCGTGGGCGACTGCGCGCCCGCGCTGGTCTTTGGCGAACCGCTGGTTCGGAT
GACGGACGCCGCGATCTGGGTGCGCGTGCACGAGCCCACCAGGCTGGCCTACGTGGCCGATGCGCTGAAGCGCTGGCGCG
AGGGCCAGGGGCCCGATGCCGTCGCGTGCCTGGTAGGCGCGGACCAGGCATGCGATCCGGCTACGCTCAGCGCTGGACTC
AGGCGTTGGCGTGCTGCTATCGGCGAGGCCAGTCGTGCCGTCGGGTATCCGCTGCCGGTCTGCGTCGCCGTGTACGCGGA
AGAAGCCAGCGGCCCCCCTGATGACTGCCCGTGGTTTGGCATCTCTGGCGGGAGCCTGCCCTCGGGAGAAGCGCTGTGCG
ACCAACTGGCCGACCGCCTTGCACAGTATCCGCAGGCGGCAGCGCCAGTTGACCGTGCGGAGCGCATGGGGCGCGCCGCA
CGCCTGGATGCGCTCGTCAGGTGGGCGTCCGGCGCATTGTTGCCGGCCTTGCGGGATGACGGGCGGGAATCAGGACGAAG
CGGGCGCCCGGTCCGCGTGGCGGCCTTCGGCGTGACTGCCGTGAAAGGCATCCCGGCTCATGATTCGCTCTACGCCCGTT
TTGTGACGCAGCTCACTGGATTGGCAACGTCCGCACGGGAAGGGAATAGGGCGTCCTATCCCTTGCCGGATGCATTGATC
CGTGGCATTGCTGTGCAGCCTGTGCGACGCGCCTTGCCGAGCGCGTTAGCACACGCCTTTGCCTGGCTGGCCCTGAGCTT
CTGCGCGGCCGCAGCCGCGTCAGCTTGGCAGAACCGCGCATTGGTGACGCGCGTCTTTGGCGACATGGCCCATTACCGCA
CCATCGGCGCGGAGCACGACGCCGCACGGGTCGACGCGTTGCAGGCGCTCAAGCGCGATCGAGATGAACTCGAGCAGTAC
CAGAGCGCCGGCGTGCCGCCACGGCTCGGGCTGGGCTTCTATCGGGGCGCGAAGCTGCTGGCGCCCCTCAACACCCTGAT
CGCAGGCTATCAGCCGCCAGCACCACCGCCTTCGACCATCGAACTGAACAGCCTTTCGCTGTTCAAGAGCGGCAGCGCGG
TGCTCAATCCCGGGTCCAACCGCGTCCTGATCGGCGCGCTGGAGTTGATCAAGGCTCATCCGGACAAGCGCGTACTGGTT
GCTGGACACACCGACGCCGTAGGCGCCGCCCAATCAAACCTCAAGCTGTCCGAGGCACGTGCCGCCTCGGTGCGCGACTG
GCTCGCCGATGCGGCTGGTCTGCCGGTGACGCGCTTCGCAATCCAGGGCTATGGCGACACCCGTCCCAAAGCACCCAACG
ACACGGAAGCCGGACGTTCGGCTAACCGCCGTGTCGAGATTACCCTCGTCCCAGATTGCCACGATGACCGTCGCGGCGTT
CAGGAAACTTTGGGCCAGTCGGCCTGTTCATTCCAGCAAAAGGAGTAG

Upstream 100 bases:

>100_bases
GTGGCCTGGGTGGGCATCGCCCTGGCTGGTGCGGCTCTGGTCTATGTTGCGCTGGACCGATGGCTGGCCGTGTCGATCGC
CCAGCTCGGTGGCTGAAAGG

Downstream 100 bases:

>100_bases
GAAGCAATGGCAATTCCCGCATACATGTGGATCAAGGACGACGGCGGAGCCGATATCAAGGGCTCGGTCACCGTGTCCGG
CCGCGAGGGCAGCGTCGAAG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MFVTGYPYRTLFSWVTALALAWLALSSPWAMTWNLLLAGLVIVLALVAIVVATRRARARRQASRAVLEAIHVSLDTLPGD
LRQNTPIVLTVGDCAPALVFGEPLVRMTDAAIWVRVHEPTRLAYVADALKRWREGQGPDAVACLVGADQACDPATLSAGL
RRWRAAIGEASRAVGYPLPVCVAVYAEEASGPPDDCPWFGISGGSLPSGEALCDQLADRLAQYPQAAAPVDRAERMGRAA
RLDALVRWASGALLPALRDDGRESGRSGRPVRVAAFGVTAVKGIPAHDSLYARFVTQLTGLATSAREGNRASYPLPDALI
RGIAVQPVRRALPSALAHAFAWLALSFCAAAAASAWQNRALVTRVFGDMAHYRTIGAEHDAARVDALQALKRDRDELEQY
QSAGVPPRLGLGFYRGAKLLAPLNTLIAGYQPPAPPPSTIELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLV
AGHTDAVGAAQSNLKLSEARAASVRDWLADAAGLPVTRFAIQGYGDTRPKAPNDTEAGRSANRRVEITLVPDCHDDRRGV
QETLGQSACSFQQKE

Sequences:

>Translated_575_residues
MFVTGYPYRTLFSWVTALALAWLALSSPWAMTWNLLLAGLVIVLALVAIVVATRRARARRQASRAVLEAIHVSLDTLPGD
LRQNTPIVLTVGDCAPALVFGEPLVRMTDAAIWVRVHEPTRLAYVADALKRWREGQGPDAVACLVGADQACDPATLSAGL
RRWRAAIGEASRAVGYPLPVCVAVYAEEASGPPDDCPWFGISGGSLPSGEALCDQLADRLAQYPQAAAPVDRAERMGRAA
RLDALVRWASGALLPALRDDGRESGRSGRPVRVAAFGVTAVKGIPAHDSLYARFVTQLTGLATSAREGNRASYPLPDALI
RGIAVQPVRRALPSALAHAFAWLALSFCAAAAASAWQNRALVTRVFGDMAHYRTIGAEHDAARVDALQALKRDRDELEQY
QSAGVPPRLGLGFYRGAKLLAPLNTLIAGYQPPAPPPSTIELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLV
AGHTDAVGAAQSNLKLSEARAASVRDWLADAAGLPVTRFAIQGYGDTRPKAPNDTEAGRSANRRVEITLVPDCHDDRRGV
QETLGQSACSFQQKE
>Mature_575_residues
MFVTGYPYRTLFSWVTALALAWLALSSPWAMTWNLLLAGLVIVLALVAIVVATRRARARRQASRAVLEAIHVSLDTLPGD
LRQNTPIVLTVGDCAPALVFGEPLVRMTDAAIWVRVHEPTRLAYVADALKRWREGQGPDAVACLVGADQACDPATLSAGL
RRWRAAIGEASRAVGYPLPVCVAVYAEEASGPPDDCPWFGISGGSLPSGEALCDQLADRLAQYPQAAAPVDRAERMGRAA
RLDALVRWASGALLPALRDDGRESGRSGRPVRVAAFGVTAVKGIPAHDSLYARFVTQLTGLATSAREGNRASYPLPDALI
RGIAVQPVRRALPSALAHAFAWLALSFCAAAAASAWQNRALVTRVFGDMAHYRTIGAEHDAARVDALQALKRDRDELEQY
QSAGVPPRLGLGFYRGAKLLAPLNTLIAGYQPPAPPPSTIELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLV
AGHTDAVGAAQSNLKLSEARAASVRDWLADAAGLPVTRFAIQGYGDTRPKAPNDTEAGRSANRRVEITLVPDCHDDRRGV
QETLGQSACSFQQKE

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=41.3461538461538, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 61370; Mature: 61370

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVTGYPYRTLFSWVTALALAWLALSSPWAMTWNLLLAGLVIVLALVAIVVATRRARARR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASRAVLEAIHVSLDTLPGDLRQNTPIVLTVGDCAPALVFGEPLVRMTDAAIWVRVHEPT
HHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCHHHHCCCHHHHCCCEEEEEECCCC
RLAYVADALKRWREGQGPDAVACLVGADQACDPATLSAGLRRWRAAIGEASRAVGYPLPV
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
CVAVYAEEASGPPDDCPWFGISGGSLPSGEALCDQLADRLAQYPQAAAPVDRAERMGRAA
HHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHH
RLDALVRWASGALLPALRDDGRESGRSGRPVRVAAFGVTAVKGIPAHDSLYARFVTQLTG
HHHHHHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHH
LATSAREGNRASYPLPDALIRGIAVQPVRRALPSALAHAFAWLALSFCAAAAASAWQNRA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTRVFGDMAHYRTIGAEHDAARVDALQALKRDRDELEQYQSAGVPPRLGLGFYRGAKLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHCHHHH
APLNTLIAGYQPPAPPPSTIELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLV
HHHHHHHCCCCCCCCCCCEEEECCCHHCCCCCCEECCCCCEEEEHHHHHHHCCCCCEEEE
AGHTDAVGAAQSNLKLSEARAASVRDWLADAAGLPVTRFAIQGYGDTRPKAPNDTEAGRS
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCCCCCCCCCCCCCC
ANRRVEITLVPDCHDDRRGVQETLGQSACSFQQKE
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFVTGYPYRTLFSWVTALALAWLALSSPWAMTWNLLLAGLVIVLALVAIVVATRRARARR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASRAVLEAIHVSLDTLPGDLRQNTPIVLTVGDCAPALVFGEPLVRMTDAAIWVRVHEPT
HHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCHHHHCCCHHHHCCCEEEEEECCCC
RLAYVADALKRWREGQGPDAVACLVGADQACDPATLSAGLRRWRAAIGEASRAVGYPLPV
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
CVAVYAEEASGPPDDCPWFGISGGSLPSGEALCDQLADRLAQYPQAAAPVDRAERMGRAA
HHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHH
RLDALVRWASGALLPALRDDGRESGRSGRPVRVAAFGVTAVKGIPAHDSLYARFVTQLTG
HHHHHHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHH
LATSAREGNRASYPLPDALIRGIAVQPVRRALPSALAHAFAWLALSFCAAAAASAWQNRA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTRVFGDMAHYRTIGAEHDAARVDALQALKRDRDELEQYQSAGVPPRLGLGFYRGAKLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHCHHHH
APLNTLIAGYQPPAPPPSTIELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLV
HHHHHHHCCCCCCCCCCCEEEECCCHHCCCCCCEECCCCCEEEEHHHHHHHCCCCCEEEE
AGHTDAVGAAQSNLKLSEARAASVRDWLADAAGLPVTRFAIQGYGDTRPKAPNDTEAGRS
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCCCCCCCCCCCCCC
ANRRVEITLVPDCHDDRRGVQETLGQSACSFQQKE
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]