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The map label for this gene is clpV1 [H]

Identifier: 73539083

GI number: 73539083

Start: 2009181

End: 2011922

Strand: Reverse

Name: clpV1 [H]

Synonym: Reut_B5260

Alternate gene names: 73539083

Gene position: 2011922-2009181 (Counterclockwise)

Preceding gene: 73539084

Following gene: 73539082

Centisome position: 73.8

GC content: 63.38

Gene sequence:

>2742_bases
ATGCGTGCGGCACCTGACACCAGTTGCCGCACTTCACTTTCTCTTCTGCAGTTCGCCATGACCAGCCGTGACTATTCCCC
GTTTCTGCGCCGCCTGAATGCGCACTGCGCCCATGCGCTGGCCGATGCCGCCAGCCTTTGTGAAACGCGAGCCCACCGGG
ACATCGAGGTGGAGCACTGGCTGGTCAAGTTGTTGGAACTCGGCGAAGGCGACCTGCTGGCGATCCTGCGGCGATATGAA
CTGGACGTGGATGGAGTCTGGAATGGTCTGCTTACCGCCATTGACCGGCTGCCACACGACCTGCGCGGCAAGCCGGGATT
GTCGGCACGTCTTGGCCAATGGCTGGAAGCGGCCTGGGTCAAGGCCTCTCTTGATAGCGGGGCGCATTCGATCCGCTCCG
CCCACCTCCTGGCCGCGTTGGCGGAGACTCCCAACCTGCTGCGGGCGCCGGATGCCTGGCCATTGCTGAGTATTTCGGCG
ACACAGATTGAACGCCTGATTCCTGAACTGGATAAGATCTCCACCGAAGCTGATCTCCCGGGTGCATCTCCCACGCCGGC
AAATCCGCGGATGTCCGACTCCCCATCGCAGACGCCGACGATGCCACCCCGACCGTTGCCGGGTCAGGCCGACACCTCTG
CGCTGGCACGGTTCACTACCGACATTACGCAGAAGGCGCGCGACGGCAGAATCGACCCCGTGTTCGGCCGTGACACGGAG
ATCCGCCAGATGATCGATATTCTCGCGCGTCGCCGTAAGAACAATCCGATCCTGGTAGGCGAGCCGGGGGTAGGTAAAAC
GGCGCTGGTCGAAGGGCTGGCCCTTAAGATCGCGCAAGCAGATGTCCCGGCAGTCATCCGCGATGTCAGCGTGCTGACGC
TGGATCTGGGGCTCCTGCAGGCCGGAGCTGGCGTCAAGGGAGAGTTCGAACAGCGCCTCAAGAACGTGATAGAGGCCGTG
CAGCAGTCGTCCACGCCGATCTTGCTCTTCATCGACGAGGCGCACACGCTGATTGGCGCGGGCAACAATGCCGGCGGCGC
CGACGCCGCCAACCTCCTGAAACCCGCGCTTGCACGCGGCGAACTGCGCACGATCGCCGCAACGACCTGGTCGGAATACA
AGCAGTACTTTGAGCGTGACGCGGCGCTTGAGCGCCGGTTCCAGATGGTCAAGGTCGACGAGCCAGACGATGAAGGCGCT
TGCCTGATGGTGCGGGGACTCAAGGAGCGCTATGCGCAGCACCACGGGGTGCACATCACCGATGCAGCAGTTGCAGCAGC
GGTCAGACTTTCGCGCCGGTATCTCACCGGGCGCCAGTTGCCTGACAAGGCGGTAGATCTGCTCGACACTGCCGCCGCTC
GCGTGCGGATGAGCCAGGAGGCGACACCGGTCGCCATCTCCGCCTGCGAAGCCGAGCGCGCCGCACTGGAGGTCGAGCGA
ACCGCCCTGCGACAGGATCAGGGTGCCACCGGGACCAGCGACGCCGAACGGCTGGCCGCCATCGATGAGCGACTGGCGTC
ACTGGATGCCCAACACGAAGAGCTTGAGCGCTCCTTTGCCGAACAGAAGGACTCCGCGCAGGCGCTGCTGGCCTTGCGTG
GGCAATGGCAAGCCGCCTCGGATGCTTCGGTGCGCCGGGATCTGGAGCCGTCGATCCTGGCAGCACACCAGGTGCTCGCG
CGTGCCGGCCAGACGTCCCTGATTCATGCGGAAGTCGATGAGAACGTCATCGCGCAGGTCATCGCCGACTGGACCGGGGT
TCCAGTCGACAGTCAGCTGTCCAATGAACTCGCCACGTTGCTGGAACTGGAATCCCGCTTGGGTGAGGTGGTGGTGGGTC
AGGACGAAGCGCTGGCCGCGCTTGGCAAGAGCCTGCGTGCTGCCAGGGCGGGGCTCAAGTGCGAGGAAGCACCCATTGGG
GTTTTTCTGCTAGTCGGTCCGTCCGGAGTCGGCAAGACAGAAACTGCGCGAGCATTGGCCGACCTGATGTTTGGCGGAGA
GCGATCGCTCATTACCATCAACCTGTCTGAATATCAGGAGGCACACACCGTCTCCCAGTTGAAGGGTTCGCCGCCGGGCT
ATGTTGGCTATGGCGAAGGCGGCATCCTGACCGAGGCCGTTCACCAGCGTCCCTACAGTGTGGTGTTGCTGGATGAAGTG
GAAAAGGCCCACCGCGATGTGCTGAACCTGTTCTACCAGGTGTTCGATCGCGGCTTCATGCGCGACGGCGAGGGCCGGGT
CATTGACTTCCGCAACACGGTCATTCTCATGACGTCGAACCTGGGCAGCGATGAAATTCTTGCAGCCAACCAGGCCGTTG
CCGAAGCTGGCGGCGATATCACCACCGCCATACTGATGGAGACCATCCGGCCCCAGCTGGTGGACCATTTCCAGCCCGCG
TTGCTGGCGCGCTTCCAGACCGTCGTATACCGTCCCCTCGCCGCCGAGGCCATGGAAAGGATCGTACGCATGAAGCTCGC
GAAGGTGGCAACTCGCATCGAGCGCCGCTTCGGCGTGCCACTGCAGTGCGAGGACGCGCTGGTGGCCGAGTTGGTCCGTG
CCTGCCTGCTCCCCGATTCCGGCGCCCGCAACATCGACAGCCTGCTGGATCAGCAGATTCTGCCTGTGCTGGCGCGCGAG
TTGCTCGCGCGCATGATGGACACGCAAATCCTGGCCGCAATCCGGCTGTCGTTTTCCGACGAAGACGGTATTGGCGTGGA
GATTGAAGAGGTGTCGCGGTGA

Upstream 100 bases:

>100_bases
AAGATCATCTGGTCGTATAAGGACGGCAACATCATTCACGCCGACAGCTGGAACGAGCGCTCATAAGCGCCATATAGCCG
GTGCCTGACACCGGACCGCA

Downstream 100 bases:

>100_bases
CGCGGGGCGGGCCAGGGCTCTTCGAGGCGGTGACGGGATATTTTGCGAACGGCGTCGCCGTGGACGAGTTCGATCCGGCC
ACGCAGACCTTCTTGTCAGT

Product: AAA ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 913; Mature: 913

Protein sequence:

>913_residues
MRAAPDTSCRTSLSLLQFAMTSRDYSPFLRRLNAHCAHALADAASLCETRAHRDIEVEHWLVKLLELGEGDLLAILRRYE
LDVDGVWNGLLTAIDRLPHDLRGKPGLSARLGQWLEAAWVKASLDSGAHSIRSAHLLAALAETPNLLRAPDAWPLLSISA
TQIERLIPELDKISTEADLPGASPTPANPRMSDSPSQTPTMPPRPLPGQADTSALARFTTDITQKARDGRIDPVFGRDTE
IRQMIDILARRRKNNPILVGEPGVGKTALVEGLALKIAQADVPAVIRDVSVLTLDLGLLQAGAGVKGEFEQRLKNVIEAV
QQSSTPILLFIDEAHTLIGAGNNAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDEGA
CLMVRGLKERYAQHHGVHITDAAVAAAVRLSRRYLTGRQLPDKAVDLLDTAAARVRMSQEATPVAISACEAERAALEVER
TALRQDQGATGTSDAERLAAIDERLASLDAQHEELERSFAEQKDSAQALLALRGQWQAASDASVRRDLEPSILAAHQVLA
RAGQTSLIHAEVDENVIAQVIADWTGVPVDSQLSNELATLLELESRLGEVVVGQDEALAALGKSLRAARAGLKCEEAPIG
VFLLVGPSGVGKTETARALADLMFGGERSLITINLSEYQEAHTVSQLKGSPPGYVGYGEGGILTEAVHQRPYSVVLLDEV
EKAHRDVLNLFYQVFDRGFMRDGEGRVIDFRNTVILMTSNLGSDEILAANQAVAEAGGDITTAILMETIRPQLVDHFQPA
LLARFQTVVYRPLAAEAMERIVRMKLAKVATRIERRFGVPLQCEDALVAELVRACLLPDSGARNIDSLLDQQILPVLARE
LLARMMDTQILAAIRLSFSDEDGIGVEIEEVSR

Sequences:

>Translated_913_residues
MRAAPDTSCRTSLSLLQFAMTSRDYSPFLRRLNAHCAHALADAASLCETRAHRDIEVEHWLVKLLELGEGDLLAILRRYE
LDVDGVWNGLLTAIDRLPHDLRGKPGLSARLGQWLEAAWVKASLDSGAHSIRSAHLLAALAETPNLLRAPDAWPLLSISA
TQIERLIPELDKISTEADLPGASPTPANPRMSDSPSQTPTMPPRPLPGQADTSALARFTTDITQKARDGRIDPVFGRDTE
IRQMIDILARRRKNNPILVGEPGVGKTALVEGLALKIAQADVPAVIRDVSVLTLDLGLLQAGAGVKGEFEQRLKNVIEAV
QQSSTPILLFIDEAHTLIGAGNNAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDEGA
CLMVRGLKERYAQHHGVHITDAAVAAAVRLSRRYLTGRQLPDKAVDLLDTAAARVRMSQEATPVAISACEAERAALEVER
TALRQDQGATGTSDAERLAAIDERLASLDAQHEELERSFAEQKDSAQALLALRGQWQAASDASVRRDLEPSILAAHQVLA
RAGQTSLIHAEVDENVIAQVIADWTGVPVDSQLSNELATLLELESRLGEVVVGQDEALAALGKSLRAARAGLKCEEAPIG
VFLLVGPSGVGKTETARALADLMFGGERSLITINLSEYQEAHTVSQLKGSPPGYVGYGEGGILTEAVHQRPYSVVLLDEV
EKAHRDVLNLFYQVFDRGFMRDGEGRVIDFRNTVILMTSNLGSDEILAANQAVAEAGGDITTAILMETIRPQLVDHFQPA
LLARFQTVVYRPLAAEAMERIVRMKLAKVATRIERRFGVPLQCEDALVAELVRACLLPDSGARNIDSLLDQQILPVLARE
LLARMMDTQILAAIRLSFSDEDGIGVEIEEVSR
>Mature_913_residues
MRAAPDTSCRTSLSLLQFAMTSRDYSPFLRRLNAHCAHALADAASLCETRAHRDIEVEHWLVKLLELGEGDLLAILRRYE
LDVDGVWNGLLTAIDRLPHDLRGKPGLSARLGQWLEAAWVKASLDSGAHSIRSAHLLAALAETPNLLRAPDAWPLLSISA
TQIERLIPELDKISTEADLPGASPTPANPRMSDSPSQTPTMPPRPLPGQADTSALARFTTDITQKARDGRIDPVFGRDTE
IRQMIDILARRRKNNPILVGEPGVGKTALVEGLALKIAQADVPAVIRDVSVLTLDLGLLQAGAGVKGEFEQRLKNVIEAV
QQSSTPILLFIDEAHTLIGAGNNAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDEGA
CLMVRGLKERYAQHHGVHITDAAVAAAVRLSRRYLTGRQLPDKAVDLLDTAAARVRMSQEATPVAISACEAERAALEVER
TALRQDQGATGTSDAERLAAIDERLASLDAQHEELERSFAEQKDSAQALLALRGQWQAASDASVRRDLEPSILAAHQVLA
RAGQTSLIHAEVDENVIAQVIADWTGVPVDSQLSNELATLLELESRLGEVVVGQDEALAALGKSLRAARAGLKCEEAPIG
VFLLVGPSGVGKTETARALADLMFGGERSLITINLSEYQEAHTVSQLKGSPPGYVGYGEGGILTEAVHQRPYSVVLLDEV
EKAHRDVLNLFYQVFDRGFMRDGEGRVIDFRNTVILMTSNLGSDEILAANQAVAEAGGDITTAILMETIRPQLVDHFQPA
LLARFQTVVYRPLAAEAMERIVRMKLAKVATRIERRFGVPLQCEDALVAELVRACLLPDSGARNIDSLLDQQILPVLARE
LLARMMDTQILAAIRLSFSDEDGIGVEIEEVSR

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=299, Percent_Identity=36.7892976588629, Blast_Score=176, Evalue=9e-44,
Organism=Escherichia coli, GI1788943, Length=689, Percent_Identity=43.5413642960813, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI1787109, Length=322, Percent_Identity=43.7888198757764, Blast_Score=257, Evalue=3e-69,
Organism=Saccharomyces cerevisiae, GI6320464, Length=726, Percent_Identity=40.3581267217631, Blast_Score=487, Evalue=1e-138,
Organism=Saccharomyces cerevisiae, GI6323002, Length=705, Percent_Identity=37.5886524822695, Blast_Score=457, Evalue=1e-129,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 99200; Mature: 99200

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAPDTSCRTSLSLLQFAMTSRDYSPFLRRLNAHCAHALADAASLCETRAHRDIEVEHW
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LVKLLELGEGDLLAILRRYELDVDGVWNGLLTAIDRLPHDLRGKPGLSARLGQWLEAAWV
HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHH
KASLDSGAHSIRSAHLLAALAETPNLLRAPDAWPLLSISATQIERLIPELDKISTEADLP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
GASPTPANPRMSDSPSQTPTMPPRPLPGQADTSALARFTTDITQKARDGRIDPVFGRDTE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
IRQMIDILARRRKNNPILVGEPGVGKTALVEGLALKIAQADVPAVIRDVSVLTLDLGLLQ
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AGAGVKGEFEQRLKNVIEAVQQSSTPILLFIDEAHTLIGAGNNAGGADAANLLKPALARG
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCC
ELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDEGACLMVRGLKERYAQHHGVHIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHCCCEEH
DAAVAAAVRLSRRYLTGRQLPDKAVDLLDTAAARVRMSQEATPVAISACEAERAALEVER
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
TALRQDQGATGTSDAERLAAIDERLASLDAQHEELERSFAEQKDSAQALLALRGQWQAAS
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DASVRRDLEPSILAAHQVLARAGQTSLIHAEVDENVIAQVIADWTGVPVDSQLSNELATL
CHHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LELESRLGEVVVGQDEALAALGKSLRAARAGLKCEEAPIGVFLLVGPSGVGKTETARALA
HHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
DLMFGGERSLITINLSEYQEAHTVSQLKGSPPGYVGYGEGGILTEAVHQRPYSVVLLDEV
HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCEEEEHHHH
EKAHRDVLNLFYQVFDRGFMRDGEGRVIDFRNTVILMTSNLGSDEILAANQAVAEAGGDI
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCH
TTAILMETIRPQLVDHFQPALLARFQTVVYRPLAAEAMERIVRMKLAKVATRIERRFGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LQCEDALVAELVRACLLPDSGARNIDSLLDQQILPVLARELLARMMDTQILAAIRLSFSD
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDGIGVEIEEVSR
CCCCCEEHHCCCC
>Mature Secondary Structure
MRAAPDTSCRTSLSLLQFAMTSRDYSPFLRRLNAHCAHALADAASLCETRAHRDIEVEHW
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LVKLLELGEGDLLAILRRYELDVDGVWNGLLTAIDRLPHDLRGKPGLSARLGQWLEAAWV
HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHH
KASLDSGAHSIRSAHLLAALAETPNLLRAPDAWPLLSISATQIERLIPELDKISTEADLP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
GASPTPANPRMSDSPSQTPTMPPRPLPGQADTSALARFTTDITQKARDGRIDPVFGRDTE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
IRQMIDILARRRKNNPILVGEPGVGKTALVEGLALKIAQADVPAVIRDVSVLTLDLGLLQ
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AGAGVKGEFEQRLKNVIEAVQQSSTPILLFIDEAHTLIGAGNNAGGADAANLLKPALARG
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCC
ELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDEGACLMVRGLKERYAQHHGVHIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHCCCEEH
DAAVAAAVRLSRRYLTGRQLPDKAVDLLDTAAARVRMSQEATPVAISACEAERAALEVER
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
TALRQDQGATGTSDAERLAAIDERLASLDAQHEELERSFAEQKDSAQALLALRGQWQAAS
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DASVRRDLEPSILAAHQVLARAGQTSLIHAEVDENVIAQVIADWTGVPVDSQLSNELATL
CHHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LELESRLGEVVVGQDEALAALGKSLRAARAGLKCEEAPIGVFLLVGPSGVGKTETARALA
HHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
DLMFGGERSLITINLSEYQEAHTVSQLKGSPPGYVGYGEGGILTEAVHQRPYSVVLLDEV
HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCEEEEHHHH
EKAHRDVLNLFYQVFDRGFMRDGEGRVIDFRNTVILMTSNLGSDEILAANQAVAEAGGDI
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCH
TTAILMETIRPQLVDHFQPALLARFQTVVYRPLAAEAMERIVRMKLAKVATRIERRFGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LQCEDALVAELVRACLLPDSGARNIDSLLDQQILPVLARELLARMMDTQILAAIRLSFSD
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDGIGVEIEEVSR
CCCCCEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]