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The map label for this gene is yfdE [H]

Identifier: 73539066

GI number: 73539066

Start: 1993570

End: 1994727

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B5243

Alternate gene names: 73539066

Gene position: 1993570-1994727 (Clockwise)

Preceding gene: 73539063

Following gene: 73539067

Centisome position: 73.13

GC content: 67.96

Gene sequence:

>1158_bases
ATGCTTCATCGTGCCCTGGAAGGCGTGCGTGTATTGGACCTGTCGCGCATCCTGGCCGGCCCCTGGTGCACCCAGAACCT
GGCGGATCTCGGCGCCGAGGTGACGAAGGTCGAACACCCCGAGCGGGGCGACGATACGCGCGGCTGGGGCCCGCCTTACA
TGTCGGCGGCCGATGGCAGCGACGCGCGCCTGTCCGGCTATTTCATCAGCTGCAATCGCGGCAAGCGTTCGGTGGCGATC
GACTACGGCACGCCCGAAGGCGCCGCACAGGTGCGCGAACTGGCGCGCGAGGCAGACGTGCTGGTCGAGAACTACAAGGT
CGGCACGCTGCGGCGCTACGGGCTGGACTACGACCGCCTCAAGGCGATCAACCCGCGACTGGTCTACCTGTCGATCACCG
GCTTCGGCCAGGACGGGCCGATGGCCGACAAACCGGGCTATGACTACGTGTTCCAGGGAATGGGCGGGCTCATGAGCTAT
ACCGGCCAGCCCGACGGCAGTCCTGGCGCCGGCCCGCTGCGCACCGGCGTGGCGGTGGTGGACCTCAGCACCGGCATGTA
CGCGACTTCGGCCGTGCTTGCTGCGCTGTACCAGCGCCACGCGACCGGCGTCGGCCAGCACCTCGATATCGCGCTGCTCG
ATGTAGCCGTGGCGCTCAACGCGAATCAGGGTGCGAATTACCTGGTATCGGGCGAGAACCCCCAGCGCAGCGGGAATGCG
CACCCGAACTGCGCGCCGTACGAAGTGTTCCGCTGCGCGGACGGCTACCTGATCCTCGCCATCGGCAATGACGGCCAGTT
CGCCCGCTTCTGTGCAGTCGCCGGTATGGCCGACCTGGCACAGGACGCGCGCTACGCGACCAACTCGGCGCGTATCGAAA
ACTTGCCGCAACTGCGCGCACTGCTGACGGAGATCTTCCCGACACGCACTCGCACCGCATGGACGGACGCCTTCGATGCC
GCCGGCGTGCCGTGGGGCCCGATCCACACTATGGAAGAAGTCTTTGCGCATCCGCAGGTGCGCCACCGCGGGCTGCAGCA
ATTCGCCGAGCACCCGGTGATGGGCACCGTGCCGATGGTGCGCAACCCTATGCTCGCCGGCCACACCGGACCGTCGCAGC
CGCCGCCGCTGCTGGGCGAACACACCGCGCCGGCCTGA

Upstream 100 bases:

>100_bases
GTTCAAAACCGGCGAACGCGCCTTTAAAAACTCTCGACTGGTTCGGCCCTGGGGCGCTCCCTATACTCGGCCGCATTGTT
TTGCGAATGCGGGAGTTGTC

Downstream 100 bases:

>100_bases
ACACAATCGATATCCTGATACGGAGACACCTGATGAAACCGACTTATCCTGTCCTCGCACTGCTGGCTGGCCTCGGCGTG
GCGGGCACCGCGCAGGCGGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYMSAADGSDARLSGYFISCNRGKRSVAI
DYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDRLKAINPRLVYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRHATGVGQHLDIALLDVAVALNANQGANYLVSGENPQRSGNA
HPNCAPYEVFRCADGYLILAIGNDGQFARFCAVAGMADLAQDARYATNSARIENLPQLRALLTEIFPTRTRTAWTDAFDA
AGVPWGPIHTMEEVFAHPQVRHRGLQQFAEHPVMGTVPMVRNPMLAGHTGPSQPPPLLGEHTAPA

Sequences:

>Translated_385_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYMSAADGSDARLSGYFISCNRGKRSVAI
DYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDRLKAINPRLVYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRHATGVGQHLDIALLDVAVALNANQGANYLVSGENPQRSGNA
HPNCAPYEVFRCADGYLILAIGNDGQFARFCAVAGMADLAQDARYATNSARIENLPQLRALLTEIFPTRTRTAWTDAFDA
AGVPWGPIHTMEEVFAHPQVRHRGLQQFAEHPVMGTVPMVRNPMLAGHTGPSQPPPLLGEHTAPA
>Mature_385_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYMSAADGSDARLSGYFISCNRGKRSVAI
DYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDRLKAINPRLVYLSITGFGQDGPMADKPGYDYVFQGMGGLMSY
TGQPDGSPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRHATGVGQHLDIALLDVAVALNANQGANYLVSGENPQRSGNA
HPNCAPYEVFRCADGYLILAIGNDGQFARFCAVAGMADLAQDARYATNSARIENLPQLRALLTEIFPTRTRTAWTDAFDA
AGVPWGPIHTMEEVFAHPQVRHRGLQQFAEHPVMGTVPMVRNPMLAGHTGPSQPPPLLGEHTAPA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=383, Percent_Identity=43.0809399477807, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI300863124, Length=409, Percent_Identity=40.3422982885086, Blast_Score=317, Evalue=2e-86,
Organism=Homo sapiens, GI13376042, Length=409, Percent_Identity=36.4303178484108, Blast_Score=271, Evalue=7e-73,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=37.3368146214099, Blast_Score=268, Evalue=4e-72,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=28.0104712041885, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI42794625, Length=385, Percent_Identity=28.051948051948, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI266458393, Length=278, Percent_Identity=29.8561151079137, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=30.4511278195489, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI266458395, Length=153, Percent_Identity=33.9869281045752, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI42822893, Length=153, Percent_Identity=33.9869281045752, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI87082093, Length=340, Percent_Identity=36.1764705882353, Blast_Score=245, Evalue=4e-66,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=31.1111111111111, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1786222, Length=346, Percent_Identity=26.0115606936416, Blast_Score=83, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=374, Percent_Identity=23.7967914438503, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=349, Percent_Identity=23.2091690544413, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=43.7994722955145, Blast_Score=315, Evalue=3e-86,
Organism=Drosophila melanogaster, GI24585488, Length=336, Percent_Identity=25.8928571428571, Blast_Score=111, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41386; Mature: 41386

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYMSAADGS
CCCHHHCCCHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DARLSGYFISCNRGKRSVAIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDRL
CCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
KAINPRLVYLSITGFGQDGPMADKPGYDYVFQGMGGLMSYTGQPDGSPGAGPLRTGVAVV
HCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEEEE
DLSTGMYATSAVLAALYQRHATGVGQHLDIALLDVAVALNANQGANYLVSGENPQRSGNA
EECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEHEEECCCCCCEEEECCCCCCCCCC
HPNCAPYEVFRCADGYLILAIGNDGQFARFCAVAGMADLAQDARYATNSARIENLPQLRA
CCCCCHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
LLTEIFPTRTRTAWTDAFDAAGVPWGPIHTMEEVFAHPQVRHRGLQQFAEHPVMGTVPMV
HHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHH
RNPMLAGHTGPSQPPPLLGEHTAPA
CCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYMSAADGS
CCCHHHCCCHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DARLSGYFISCNRGKRSVAIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDRL
CCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
KAINPRLVYLSITGFGQDGPMADKPGYDYVFQGMGGLMSYTGQPDGSPGAGPLRTGVAVV
HCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEEEE
DLSTGMYATSAVLAALYQRHATGVGQHLDIALLDVAVALNANQGANYLVSGENPQRSGNA
EECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEHEEECCCCCCEEEECCCCCCCCCC
HPNCAPYEVFRCADGYLILAIGNDGQFARFCAVAGMADLAQDARYATNSARIENLPQLRA
CCCCCHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
LLTEIFPTRTRTAWTDAFDAAGVPWGPIHTMEEVFAHPQVRHRGLQQFAEHPVMGTVPMV
HHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHH
RNPMLAGHTGPSQPPPLLGEHTAPA
CCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]