Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 73539005

GI number: 73539005

Start: 1923253

End: 1923978

Strand: Reverse

Name: yeaM [H]

Synonym: Reut_B5182

Alternate gene names: 73539005

Gene position: 1923978-1923253 (Counterclockwise)

Preceding gene: 73539008

Following gene: 73539004

Centisome position: 70.57

GC content: 62.12

Gene sequence:

>726_bases
ATGGCGAGGAAGCTGAAGGATGGCTTCCATATCTCCGCTCATTCTCATCCGCGCGGCCAACTCATCTACGCCTATGTGGG
CGCAATCCTGGTTACAACGGACTTCGGTTCCTGGGTCGTGCCGCCGCAGCGCGCGGTATGGGTGCCGTGCAACGTCGAAC
ATGCCATGCAGGCTTGCGGCGACGTCGAGATGCGCACCGTCTATATCCGTGCCGATGCCGTTCCCGCGGAACTGCGTGAT
TGTTGTGTCGTCGCTGTCCCGCCCTTGTTGAGGGAGCTGATTTCGGCGGTGGTTCGCATGCCCCTGGACTACGATCCAGG
CAGCCGGGATGGCCTCGTGGTCGAGCTGCTCTTGCAGGACCTGCGACCGCTTTCCGTCGTTCCGCTGCACTTGCCGATGC
CGAAGGATGCCCGGCTTAACAAGATCTGCGCGAAGATTCTCGACGATCCCTCGGACGAGACCTCCGTGGAGGCGTGGAGC
CGCTCGGTGGGCGCAAGCGAGCGGACCATCATCCGCTTGTTCCCGGAGGAAACGGGCATGACGTACAGCCGCTGGAAGCA
GCAGGCAAGGCTGATGGCGGCAGTGCGGCTGCTCGCCGAGGGATGTCATGTCACGGACATTGCCTTGCAGCTTGGATATG
AAAGTCCAAGCGCCTTCAGCGCCATGTTCAGGCGAGCGCTGGGCATGACGCCTACCGAATATTTCAGGGACAGGGCCGGC
GACTAG

Upstream 100 bases:

>100_bases
CGGCGCGCCCCTGGGTGACAACGACTATCGCAAAGACGCCATGTTTGGAAAGAGTGAAAACCGGGATGACTACCAGGCGA
TAGACCGGCCGGTGGGCGGG

Downstream 100 bases:

>100_bases
CATCGCGAGTAGTTTGGCGTCTTCTCGACATCAACTGGCGTCACCGCACGAATCGCATACCGCACCATGCGGCACAGTCA
AGGTGTCGGCGGCCTGCCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MARKLKDGFHISAHSHPRGQLIYAYVGAILVTTDFGSWVVPPQRAVWVPCNVEHAMQACGDVEMRTVYIRADAVPAELRD
CCVVAVPPLLRELISAVVRMPLDYDPGSRDGLVVELLLQDLRPLSVVPLHLPMPKDARLNKICAKILDDPSDETSVEAWS
RSVGASERTIIRLFPEETGMTYSRWKQQARLMAAVRLLAEGCHVTDIALQLGYESPSAFSAMFRRALGMTPTEYFRDRAG
D

Sequences:

>Translated_241_residues
MARKLKDGFHISAHSHPRGQLIYAYVGAILVTTDFGSWVVPPQRAVWVPCNVEHAMQACGDVEMRTVYIRADAVPAELRD
CCVVAVPPLLRELISAVVRMPLDYDPGSRDGLVVELLLQDLRPLSVVPLHLPMPKDARLNKICAKILDDPSDETSVEAWS
RSVGASERTIIRLFPEETGMTYSRWKQQARLMAAVRLLAEGCHVTDIALQLGYESPSAFSAMFRRALGMTPTEYFRDRAG
D
>Mature_240_residues
ARKLKDGFHISAHSHPRGQLIYAYVGAILVTTDFGSWVVPPQRAVWVPCNVEHAMQACGDVEMRTVYIRADAVPAELRDC
CVVAVPPLLRELISAVVRMPLDYDPGSRDGLVVELLLQDLRPLSVVPLHLPMPKDARLNKICAKILDDPSDETSVEAWSR
SVGASERTIIRLFPEETGMTYSRWKQQARLMAAVRLLAEGCHVTDIALQLGYESPSAFSAMFRRALGMTPTEYFRDRAGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 26832; Mature: 26701

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKLKDGFHISAHSHPRGQLIYAYVGAILVTTDFGSWVVPPQRAVWVPCNVEHAMQACG
CCCCCCCCEEEECCCCCCCCCHHHHHCCHHEEECCCCCCCCCCCEEEEECCHHHHHHHCC
DVEMRTVYIRADAVPAELRDCCVVAVPPLLRELISAVVRMPLDYDPGSRDGLVVELLLQD
CCEEEEEEEEECCCCHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
LRPLSVVPLHLPMPKDARLNKICAKILDDPSDETSVEAWSRSVGASERTIIRLFPEETGM
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC
TYSRWKQQARLMAAVRLLAEGCHVTDIALQLGYESPSAFSAMFRRALGMTPTEYFRDRAG
CHHHHHHHHHHHHHHHHHHCCCCCEEHHEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCC
D
C
>Mature Secondary Structure 
ARKLKDGFHISAHSHPRGQLIYAYVGAILVTTDFGSWVVPPQRAVWVPCNVEHAMQACG
CCCCCCCEEEECCCCCCCCCHHHHHCCHHEEECCCCCCCCCCCEEEEECCHHHHHHHCC
DVEMRTVYIRADAVPAELRDCCVVAVPPLLRELISAVVRMPLDYDPGSRDGLVVELLLQD
CCEEEEEEEEECCCCHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
LRPLSVVPLHLPMPKDARLNKICAKILDDPSDETSVEAWSRSVGASERTIIRLFPEETGM
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC
TYSRWKQQARLMAAVRLLAEGCHVTDIALQLGYESPSAFSAMFRRALGMTPTEYFRDRAG
CHHHHHHHHHHHHHHHHHHCCCCCEEHHEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]